Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LMH68_RS06235 Genome accession   NZ_CP170175
Coordinates   1388974..1389531 (-) Length   185 a.a.
NCBI ID   WP_017061342.1    Uniprot ID   -
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1383974..1394531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS06215 (LMH68_006220) - 1384380..1384712 (-) 333 WP_017061346.1 hypothetical protein -
  LMH68_RS06220 (LMH68_006225) pilO 1384705..1385352 (-) 648 WP_017061345.1 type 4a pilus biogenesis protein PilO -
  LMH68_RS06225 (LMH68_006230) - 1385352..1386794 (-) 1443 WP_229648292.1 MSHA biogenesis protein MshI -
  LMH68_RS06230 (LMH68_006235) csrD 1386797..1388812 (-) 2016 WP_229648293.1 RNase E specificity factor CsrD -
  LMH68_RS06235 (LMH68_006240) ssb 1388974..1389531 (-) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  LMH68_RS06240 (LMH68_006245) qstR 1389810..1390457 (+) 648 WP_029235590.1 LuxR C-terminal-related transcriptional regulator Regulator
  LMH68_RS06245 (LMH68_006250) galU 1390615..1391487 (+) 873 WP_017061340.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LMH68_RS06250 (LMH68_006255) uvrA 1391637..1394468 (+) 2832 WP_017061339.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20400.52 Da        Isoelectric Point: 5.2358

>NTDB_id=1055431 LMH68_RS06235 WP_017061342.1 1388974..1389531(-) (ssb) [Vibrio sp. F13 strain 10N.222.55.B3]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1055431 LMH68_RS06235 WP_017061342.1 1388974..1389531(-) (ssb) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTTGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACACGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAACAACAATACAGTGCTCCCGCTCAACAGCAGCCAAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.822
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.584
  ssb Neisseria meningitidis MC58

47.568

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.476

Multiple sequence alignment