Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R9A04_RS07185 Genome accession   NZ_AP028402
Coordinates   1384468..1384983 (-) Length   171 a.a.
NCBI ID   WP_002855725.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11531     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1379468..1389983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A04_RS07165 (B11531_14190) - 1379581..1381398 (-) 1818 WP_317729716.1 motility associated factor glycosyltransferase family protein -
  R9A04_RS07175 (B11531_14210) - 1381395..1383216 (-) 1822 Protein_1389 motility associated factor glycosyltransferase family protein -
  R9A04_RS07180 (B11531_14220) - 1383226..1384467 (-) 1242 WP_317729717.1 DUF2920 family protein -
  R9A04_RS07185 (B11531_14230) ctsG 1384468..1384983 (-) 516 WP_002855725.1 type II secretion system protein Machinery gene
  R9A04_RS07190 (B11531_14240) tsaD 1384984..1385991 (-) 1008 WP_317729718.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R9A04_RS07195 (B11531_14250) - 1385988..1387382 (-) 1395 WP_317729719.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R9A04_RS07200 (B11531_14260) dxr 1387384..1388454 (-) 1071 WP_052805419.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R9A04_RS07205 (B11531_14270) cdsA 1388451..1389176 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  R9A04_RS07210 (B11531_14280) - 1389185..1389523 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18659.50 Da        Isoelectric Point: 7.8499

>NTDB_id=105501 R9A04_RS07185 WP_002855725.1 1384468..1384983(-) (ctsG) [Campylobacter jejuni strain BCH-11531]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENVDFTSPSSNKACVILSKNENFKNL
ASKTYLLTGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105501 R9A04_RS07185 WP_002855725.1 1384468..1384983(-) (ctsG) [Campylobacter jejuni strain BCH-11531]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGTGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAGACTTTACGAGCCCTTCTAGCAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAACAGGAGGAAGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.941

99.415

0.924

Multiple sequence alignment