Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BCT18_RS04065 Genome accession   NZ_CP170034
Coordinates   841265..842788 (+) Length   507 a.a.
NCBI ID   WP_102270526.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.222.54.F11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 836265..847788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCT18_RS04050 (BCT18_04050) - 837880..838848 (-) 969 WP_010433254.1 branched-chain amino acid transaminase -
  BCT18_RS04055 (BCT18_04055) ilvM 838861..839145 (-) 285 WP_010433257.1 acetolactate synthase 2 small subunit -
  BCT18_RS04060 (BCT18_04060) ilvG 839147..840793 (-) 1647 WP_010433260.1 acetolactate synthase 2 catalytic subunit -
  BCT18_RS04065 (BCT18_04065) comM 841265..842788 (+) 1524 WP_102270526.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BCT18_RS04070 (BCT18_04070) - 842916..843869 (-) 954 WP_010433296.1 DUF2860 domain-containing protein -
  BCT18_RS04075 (BCT18_04075) - 844009..844608 (-) 600 WP_010433299.1 thiol:disulfide interchange protein DsbA/DsbL -
  BCT18_RS04080 (BCT18_04080) - 844664..845650 (-) 987 WP_029189268.1 serine/threonine protein kinase -
  BCT18_RS04085 (BCT18_04085) ccoG 845725..847143 (-) 1419 WP_016784122.1 cytochrome c oxidase accessory protein CcoG -
  BCT18_RS04090 (BCT18_04090) - 847471..847734 (-) 264 WP_010433308.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55593.81 Da        Isoelectric Point: 8.1974

>NTDB_id=1054882 BCT18_RS04065 WP_102270526.1 841265..842788(+) (comM) [Vibrio cyclitrophicus strain 10N.222.54.F11]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKKITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADRVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHQADVSVLRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSN
EEAMETASIASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVRQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1054882 BCT18_RS04065 WP_102270526.1 841265..842788(+) (comM) [Vibrio cyclitrophicus strain 10N.222.54.F11]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTGGGTGTAGAGGCTCCAGAAGTGACAGTCGAGGTGCATATCAGCAA
TGGAATGCCCGGTTTTACGTTGGTGGGTTTACCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCATCGAAAAAAATCACGGTTAACTTAGCTCCCGCAGATTTACCGAAAGAAGGTGGGCGG
TTTGACTTGCCTATCGCGCTTGGGATTTTAGTTGCGTCGGACCAGTTACCCACATCAAAAATAGCTCAACATGAATTTAT
TGGTGAGTTAGCGCTGTCGGGTGAGTTGCGCTCGGTGAAAGGGGTACTGCCTGCAACACTCGCTGCTGACAGAGTTGAGC
GTTGCTTAGTCGTACCGCATCACAATGGCGATCAGGCTGCTTTAGTCGGTAAAGGGGCACATAAGTCGGCGCAAACCTTG
TTGGAGGTTTGTGCAGATATGTGTGGTCAGGCTCAGCTTGGTCTATATAGAACGGAACATCATCAGGCTGATGTTTCAGT
GCTTCGCGACCTACAAGATATTATCGGCCAGCAGCAAGGCAAGCGAGCATTAGAAATCGCTGCTGCTGGTAACCATAATT
TATTGTTCCTCGGCCCGCCTGGAACTGGCAAAACGATGTTGGCCTCGCGACTACGCGATTTATTGCCTGAGATGAGTAAC
GAAGAAGCGATGGAAACGGCTTCGATCGCTTCTTTAACTCAACAAGAGATCAATCAATACAACTGGAAGCAACGACCTTT
TCGGTCCCCCCATCATTCGAGCTCAATGGCAGCATTGGTGGGTGGTGGTTCGGTGCCTCGCCCTGGTGAGATATCTTTGG
CGCATAACGGGTTATTGTTTCTTGATGAGATGCCTGAGTTTGAGCGCAAGGTACTCGATTCTTTGCGAGAGCCGTTGGAG
TCGGGTGAAATCATTATCTCTCGTGCGGCAGGTAAGACGCGTTTTCCTGCGCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGCCCTACAGGTTATTATGAAGGCAATCAAGCTCGAGCGAACCCACAAATCATCCTTCGCTACCTCAATCGACTATCAG
GGCCGTTATTGGACCGATTCGATATGTCGTTAGAGATCCCCCTGTTGCCCAAAGGGATGTTAGCCGAAGGTGGCGACCGT
GGTGAAACGACTCAAGTCGTAAAGCAAAGGGTCAGGCAGGCTCGTGAGCTGATGCTATCTCGCAATCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCGTTAAGACGTGAGGATGCGGAGTTTCTGGAAACGGCATTGCACC
GATTGGGCTTATCGATTCGCGCTTACCACCGGATCATCAAGGTGGCGCGAACCATTGCTGACCTTGACGGTAATGAGCAG
ATTGAAAAGAAGCACCTATCGGAAGCGCTTGGCTATCGAGCCATGGATCGGTTGTTGAAGCAACTCACAGCTCAAGCTGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

64.694

100

0.647
  comM Glaesserella parasuis strain SC1401

62.549

100

0.629
  comM Legionella pneumophila str. Paris

49.395

97.83

0.483
  comM Legionella pneumophila strain ERS1305867

49.395

97.83

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.803

0.428

Multiple sequence alignment