Detailed information NTG1054432

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCV18_RS10440
• Genome accession: NZ_CP170009
• Coordinates: 2247082..2247951 (-)
• Length: 289 a.a.
• NCBI ID: WP_016768203.1
• Uniprot ID: A0AAN0LNW9
• Organism: Vibrio cyclitrophicus strain 10N.286.54.F2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2242082..2252951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV18_RS10405 (BCV18_10405)	rpsP	2243119..2243367 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
BCV18_RS10410 (BCV18_10410)	rimM	2243392..2243946 (+)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCV18_RS10415 (BCV18_10415)	trmD	2243973..2244713 (+)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCV18_RS10420 (BCV18_10420)	rplS	2244773..2245126 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
BCV18_RS10425 (BCV18_10425)	yacG	2245419..2245616 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCV18_RS10430 (BCV18_10430)	zapD	2245698..2246438 (-)	741	WP_010435917.1	cell division protein ZapD	-
BCV18_RS10435 (BCV18_10435)	coaE	2246465..2247079 (-)	615	WP_010435920.1	dephospho-CoA kinase	-
BCV18_RS10440 (BCV18_10440)	pilD	2247082..2247951 (-)	870	WP_016768203.1	prepilin peptidase	Machinery gene
BCV18_RS10445 (BCV18_10445)	pilC	2248018..2249247 (-)	1230	WP_016768204.1	type II secretion system F family protein	Machinery gene
BCV18_RS10450 (BCV18_10450)	pilB	2249262..2250947 (-)	1686	WP_065100288.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCV18_RS10455 (BCV18_10455)	pilA	2250947..2251420 (-)	474	WP_016790756.1	pilin	Machinery gene
BCV18_RS10460 (BCV18_10460)	nadC	2251674..2252564 (-)	891	WP_004738163.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32578.79 Da
• Isoelectric Point: 7.9444

>NTDB_id=1054432 BCV18_RS10440 WP_016768203.1 2247082..2247951(-) (pilD) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054432 BCV18_RS10440 WP_016768203.1 2247082..2247951(-) (pilD) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.702	100	0.737
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446