Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BCV18_RS06270 | Genome accession | NZ_CP170009 |
| Coordinates | 1402060..1402614 (-) | Length | 184 a.a. |
| NCBI ID | WP_010434324.1 | Uniprot ID | A0A7Z1MML7 |
| Organism | Vibrio cyclitrophicus strain 10N.286.54.F2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1397060..1407614
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV18_RS06250 (BCV18_06250) | - | 1397466..1397798 (-) | 333 | WP_016788320.1 | MSHA biogenesis protein MshK | - |
| BCV18_RS06255 (BCV18_06255) | pilO | 1397791..1398438 (-) | 648 | WP_010434330.1 | type 4a pilus biogenesis protein PilO | - |
| BCV18_RS06260 (BCV18_06260) | - | 1398438..1399880 (-) | 1443 | WP_065100571.1 | MSHA biogenesis protein MshI | - |
| BCV18_RS06265 (BCV18_06265) | csrD | 1399883..1401898 (-) | 2016 | WP_016767796.1 | RNase E specificity factor CsrD | - |
| BCV18_RS06270 (BCV18_06270) | ssb | 1402060..1402614 (-) | 555 | WP_010434324.1 | single-stranded DNA-binding protein | Machinery gene |
| BCV18_RS06275 (BCV18_06275) | qstR | 1402893..1403540 (+) | 648 | WP_016767798.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| BCV18_RS06280 (BCV18_06280) | galU | 1403698..1404570 (+) | 873 | WP_004735975.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| BCV18_RS06285 (BCV18_06285) | uvrA | 1404754..1407585 (+) | 2832 | WP_050612918.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20286.42 Da Isoelectric Point: 5.2358
>NTDB_id=1054410 BCV18_RS06270 WP_010434324.1 1402060..1402614(-) (ssb) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=1054410 BCV18_RS06270 WP_010434324.1 1402060..1402614(-) (ssb) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCGAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAACAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCGAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAACAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.72 |
100 |
0.826 |
| ssb | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.582 |
| ssb | Neisseria meningitidis MC58 |
47.826 |
100 |
0.478 |
| ssb | Neisseria gonorrhoeae MS11 |
47.826 |
100 |
0.478 |