Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BCV18_RS06275 Genome accession   NZ_CP170009
Coordinates   1402893..1403540 (+) Length   215 a.a.
NCBI ID   WP_016767798.1    Uniprot ID   A0AAN0LZQ5
Organism   Vibrio cyclitrophicus strain 10N.286.54.F2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397893..1408540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV18_RS06260 (BCV18_06260) - 1398438..1399880 (-) 1443 WP_065100571.1 MSHA biogenesis protein MshI -
  BCV18_RS06265 (BCV18_06265) csrD 1399883..1401898 (-) 2016 WP_016767796.1 RNase E specificity factor CsrD -
  BCV18_RS06270 (BCV18_06270) ssb 1402060..1402614 (-) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene
  BCV18_RS06275 (BCV18_06275) qstR 1402893..1403540 (+) 648 WP_016767798.1 LuxR C-terminal-related transcriptional regulator Regulator
  BCV18_RS06280 (BCV18_06280) galU 1403698..1404570 (+) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BCV18_RS06285 (BCV18_06285) uvrA 1404754..1407585 (+) 2832 WP_050612918.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25029.27 Da        Isoelectric Point: 9.9854

>NTDB_id=1054411 BCV18_RS06275 WP_016767798.1 1402893..1403540(+) (qstR) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MRKSRYARTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLIVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGIQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1054411 BCV18_RS06275 WP_016767798.1 1402893..1403540(+) (qstR) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAGAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTACAAAGAGGTGCCACAGTTAATCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCCGAACAAAAAGTGAAAATAGCAAAGGGGATTCAACAGGTCATTAATGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCGGGGTCATCCAACACTCAAATAGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATTTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488

Multiple sequence alignment