Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BCV29_RS11875 | Genome accession | NZ_CP170001 |
| Coordinates | 2623232..2623786 (+) | Length | 184 a.a. |
| NCBI ID | WP_010434324.1 | Uniprot ID | A0A7Z1MML7 |
| Organism | Vibrio cyclitrophicus strain 10N.286.55.B4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2618232..2628786
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV29_RS11860 (BCV29_11860) | uvrA | 2618261..2621092 (-) | 2832 | WP_102313602.1 | excinuclease ABC subunit UvrA | - |
| BCV29_RS11865 (BCV29_11865) | galU | 2621276..2622148 (-) | 873 | WP_102306656.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| BCV29_RS11870 (BCV29_11870) | qstR | 2622306..2622953 (-) | 648 | WP_016789730.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| BCV29_RS11875 (BCV29_11875) | ssb | 2623232..2623786 (+) | 555 | WP_010434324.1 | single-stranded DNA-binding protein | Machinery gene |
| BCV29_RS11880 (BCV29_11880) | csrD | 2623948..2625963 (+) | 2016 | WP_016767796.1 | RNase E specificity factor CsrD | - |
| BCV29_RS11885 (BCV29_11885) | - | 2625966..2627408 (+) | 1443 | WP_010434328.1 | MSHA biogenesis protein MshI | - |
| BCV29_RS11890 (BCV29_11890) | pilO | 2627408..2628055 (+) | 648 | WP_010434330.1 | type 4a pilus biogenesis protein PilO | - |
| BCV29_RS11895 (BCV29_11895) | - | 2628048..2628380 (+) | 333 | WP_016788320.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20286.42 Da Isoelectric Point: 5.2358
>NTDB_id=1054300 BCV29_RS11875 WP_010434324.1 2623232..2623786(+) (ssb) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=1054300 BCV29_RS11875 WP_010434324.1 2623232..2623786(+) (ssb) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCGAATGG
CGGCGCAGTAGCGAATATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGGTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCGAATGG
CGGCGCAGTAGCGAATATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGGTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.72 |
100 |
0.826 |
| ssb | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.582 |
| ssb | Neisseria meningitidis MC58 |
47.826 |
100 |
0.478 |
| ssb | Neisseria gonorrhoeae MS11 |
47.826 |
100 |
0.478 |