Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BCV29_RS11870 Genome accession   NZ_CP170001
Coordinates   2622306..2622953 (-) Length   215 a.a.
NCBI ID   WP_016789730.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.55.B4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2617306..2627953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV29_RS11860 (BCV29_11860) uvrA 2618261..2621092 (-) 2832 WP_102313602.1 excinuclease ABC subunit UvrA -
  BCV29_RS11865 (BCV29_11865) galU 2621276..2622148 (-) 873 WP_102306656.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BCV29_RS11870 (BCV29_11870) qstR 2622306..2622953 (-) 648 WP_016789730.1 LuxR C-terminal-related transcriptional regulator Regulator
  BCV29_RS11875 (BCV29_11875) ssb 2623232..2623786 (+) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene
  BCV29_RS11880 (BCV29_11880) csrD 2623948..2625963 (+) 2016 WP_016767796.1 RNase E specificity factor CsrD -
  BCV29_RS11885 (BCV29_11885) - 2625966..2627408 (+) 1443 WP_010434328.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25015.25 Da        Isoelectric Point: 9.9854

>NTDB_id=1054299 BCV29_RS11870 WP_016789730.1 2622306..2622953(-) (qstR) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MRKSRYARTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLVVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGLQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1054299 BCV29_RS11870 WP_016789730.1 2622306..2622953(-) (qstR) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAAAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTACAAAGAGGTGCCACAGTTAGTCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCTGAACAAAAAGTGAAAATAGCAAAGGGGCTTCAACAGGTCATTAATGGTGATAATTGGCTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCGGGGTCATCCAACACTCAAATAGCGGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATCTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

55.349

100

0.553
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54
  qstR Vibrio cholerae strain A1552

49.533

99.535

0.493

Multiple sequence alignment