Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BCV36_RS13580 Genome accession   NZ_CP169997
Coordinates   3045594..3047117 (+) Length   507 a.a.
NCBI ID   WP_412485914.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.55.C4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3040594..3052117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV36_RS13565 (BCV36_13565) - 3042209..3043177 (-) 969 WP_010433254.1 branched-chain amino acid transaminase -
  BCV36_RS13570 (BCV36_13570) ilvM 3043190..3043474 (-) 285 WP_010433257.1 acetolactate synthase 2 small subunit -
  BCV36_RS13575 (BCV36_13575) ilvG 3043476..3045122 (-) 1647 WP_010433260.1 acetolactate synthase 2 catalytic subunit -
  BCV36_RS13580 (BCV36_13580) comM 3045594..3047117 (+) 1524 WP_412485914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BCV36_RS13585 (BCV36_13585) - 3047245..3048198 (-) 954 WP_010433296.1 DUF2860 domain-containing protein -
  BCV36_RS13590 (BCV36_13590) - 3048338..3048937 (-) 600 WP_010433299.1 thiol:disulfide interchange protein DsbA/DsbL -
  BCV36_RS13595 (BCV36_13595) - 3048993..3049979 (-) 987 WP_029189268.1 serine/threonine protein kinase -
  BCV36_RS13600 (BCV36_13600) ccoG 3050054..3051472 (-) 1419 WP_016784122.1 cytochrome c oxidase accessory protein CcoG -
  BCV36_RS13605 (BCV36_13605) - 3051800..3052063 (-) 264 WP_010433308.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55647.91 Da        Isoelectric Point: 8.1981

>NTDB_id=1054213 BCV36_RS13580 WP_412485914.1 3045594..3047117(+) (comM) [Vibrio cyclitrophicus strain 10N.286.55.C4]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADRVERCLVVPHHNGDQAALVGKGAHKLAQTL
LEVCADMCGQAQLGLYRTEHHQADVSVLRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSN
EEAMETASIASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVRQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1054213 BCV36_RS13580 WP_412485914.1 3045594..3047117(+) (comM) [Vibrio cyclitrophicus strain 10N.286.55.C4]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTGGGTGTAGAGGCTCCAGAAGTGACAGTCGAGGTGCATATCAGCAA
TGGAATGCCCGGTTTTACGTTGGTGGGTTTACCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCATCGAAAAGGATCACGGTTAACTTAGCTCCCGCAGATTTACCGAAAGAAGGTGGGCGG
TTTGACTTGCCTATCGCGCTTGGGATTTTAGTTGCGTCGGACCAGTTACCCACATCAAAAATAGCTCAACATGAATTTAT
TGGTGAGTTAGCGCTGTCGGGTGAGTTGCGCTCGGTGAAAGGGGTACTGCCTGCAACACTCGCTGCTGACAGAGTTGAGC
GTTGCTTAGTCGTACCGCATCACAATGGCGATCAGGCAGCTTTAGTCGGTAAAGGGGCACATAAGTTGGCGCAAACCTTG
TTGGAGGTTTGTGCGGATATGTGTGGTCAGGCTCAGCTTGGTCTATATAGAACGGAACATCATCAGGCTGATGTTTCAGT
GCTTCGCGACCTACAAGATATTATCGGCCAGCAGCAAGGCAAGCGAGCATTAGAAATAGCTGCTGCTGGTAACCATAATT
TATTGTTCCTCGGCCCGCCTGGAACTGGCAAAACGATGTTGGCCTCGCGACTACGCGATTTATTGCCTGAGATGAGTAAC
GAAGAAGCGATGGAAACGGCTTCGATCGCTTCTTTAACTCAACAAGAGATCAATCAATACAACTGGAAGCAACGACCTTT
TAGGTCCCCCCATCATTCGAGCTCAATGGCAGCATTGGTGGGTGGTGGTTCGGTGCCTCGCCCTGGTGAGATATCTTTGG
CGCATAACGGGTTATTGTTTCTTGATGAGATGCCTGAGTTTGAGCGCAAGGTACTCGATTCTTTGCGAGAGCCGTTGGAG
TCGGGTGAAATCATTATCTCTCGTGCGGCAGGTAAGACGCGTTTTCCTGCGCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGCCCTACAGGTTATTATGAAGGCAATCAAGCTCGAGCGAACCCACAAATCATCCTTCGCTACCTCAATCGACTATCAG
GGCCGTTATTGGACCGATTCGATATGTCGTTAGAGATCCCCCTGTTGCCCAAAGGGATGTTAGCCGAAGGTGGCGACCGT
GGTGAAACGACTCAAGTCGTAAAGCAAAGGGTCAGGCAGGCTCGTGAGCTGATGCTATCTCGCAATCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCGTTAAGACGTGAGGATGCGGAGTTTCTGGAAACGGCATTGCACC
GATTGGGCTTATCGATTCGCGCTTACCACCGGATCATCAAGGTGGCGCGAACCATTGCTGACCTTGACGGTAATGAGCAG
ATTGAAAAGAAGCACCTATCGGAAGCGCTTGGCTATCGAGCCATGGATCGGTTGTTGAAGCAACTCACAGCTCAAGCTGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

64.892

100

0.649
  comM Glaesserella parasuis strain SC1401

62.745

100

0.631
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.406

100

0.424

Multiple sequence alignment