Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACE4QZ_RS26960 Genome accession   NZ_CP169881
Coordinates   5752615..5754105 (+) Length   496 a.a.
NCBI ID   WP_021784858.1    Uniprot ID   -
Organism   Pseudomonas sp. DCA-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5747615..5759105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4QZ_RS26945 - 5749141..5749440 (+) 300 Protein_5291 magnesium chelatase domain-containing protein -
  ACE4QZ_RS26950 - 5750026..5750514 (+) 489 WP_028698276.1 Hcp family type VI secretion system effector -
  ACE4QZ_RS26955 - 5750524..5751501 (+) 978 WP_021784856.1 hypothetical protein -
  ACE4QZ_RS26960 comM 5752615..5754105 (+) 1491 WP_021784858.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACE4QZ_RS26965 - 5754138..5754566 (-) 429 WP_021784859.1 DoxX family protein -
  ACE4QZ_RS26970 - 5754684..5755052 (-) 369 WP_031322660.1 response regulator transcription factor -
  ACE4QZ_RS26975 - 5755049..5756041 (-) 993 WP_021784861.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52950.83 Da        Isoelectric Point: 7.5367

>NTDB_id=1054030 ACE4QZ_RS26960 WP_021784858.1 5752615..5754105(+) (comM) [Pseudomonas sp. DCA-1]
MSLALVHSRAQVGVQAPAVSVETHLTNGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLADMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHSRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCETI
GRTHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1054030 ACE4QZ_RS26960 WP_021784858.1 5752615..5754105(+) (comM) [Pseudomonas sp. DCA-1]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGACCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATTGCCCTGGGCATCCTTGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGCCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGGCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAGGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGATCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGCTGTTCACCGGGCCGCCCGGCACCGGCAAAACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCAGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGGCCCTTTCG
CCACCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTCGAGCGGCGTGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGCGAAATCGTGATTGCCCGTGCCCGTGACAAGGTGCGTTTTCCTGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAACTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAAAGCACTACGTTGAACAACCAGCCCTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGCCGACAAGGGTGTGCAAATGCATT
TCTAGACCTTGAAGGTTTAAGGCACCACTGTGGGTTGGTAGCAGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGGGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGACGATT
GGCCGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCAGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.048

100

0.56
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

54.291

100

0.548
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.482

Multiple sequence alignment