Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABUS28_RS16635 Genome accession   NZ_CP169866
Coordinates   3458707..3460194 (+) Length   495 a.a.
NCBI ID   WP_261480848.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp779     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3453707..3465194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS28_RS16610 ribD 3454623..3455708 (-) 1086 WP_001292517.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABUS28_RS16615 nrdR 3455724..3456182 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  ABUS28_RS16620 - 3456341..3457738 (-) 1398 WP_000738520.1 ammonium transporter -
  ABUS28_RS16625 glnK 3457796..3458134 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ABUS28_RS16630 - 3458414..3458641 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  ABUS28_RS16635 comM 3458707..3460194 (+) 1488 WP_261480848.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABUS28_RS16640 - 3460209..3461643 (-) 1435 Protein_3244 PLP-dependent aminotransferase family protein -
  ABUS28_RS16645 - 3461755..3462531 (+) 777 WP_261480847.1 aldolase -
  ABUS28_RS16650 - 3462547..3463425 (+) 879 WP_004836311.1 dihydrodipicolinate synthase family protein -
  ABUS28_RS16655 - 3463468..3464280 (-) 813 WP_000975212.1 TorF family putative porin -
  ABUS28_RS16660 - 3464337..3464507 (-) 171 WP_002009550.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54488.37 Da        Isoelectric Point: 7.4187

>NTDB_id=1053834 ABUS28_RS16635 WP_261480848.1 3458707..3460194(+) (comM) [Acinetobacter baumannii strain Rp779]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPSLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRSRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
RETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1053834 ABUS28_RS16635 WP_261480848.1 3458707..3460194(+) (comM) [Acinetobacter baumannii strain Rp779]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAGTCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCTCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CGAGAAACGCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGAGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAATCGTATATCGGGAC
CGTTACTCGATCGTATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCCAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGAGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment