Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABUS32_RS18100 Genome accession   NZ_CP169805
Coordinates   3748545..3749675 (+) Length   376 a.a.
NCBI ID   WP_049592564.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HvAb04     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3743545..3754675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS32_RS18075 - 3743806..3744012 (-) 207 WP_000182542.1 hypothetical protein -
  ABUS32_RS18080 - 3744066..3746180 (-) 2115 WP_001120685.1 TonB-dependent copper receptor -
  ABUS32_RS18085 - 3746252..3746680 (-) 429 WP_000231986.1 DUF2946 family protein -
  ABUS32_RS18090 def 3746717..3747247 (-) 531 WP_001196539.1 peptide deformylase -
  ABUS32_RS18095 tsaP 3747370..3748524 (+) 1155 WP_000755277.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABUS32_RS18100 dprA 3748545..3749675 (+) 1131 WP_049592564.1 DNA-processing protein DprA Machinery gene
  ABUS32_RS18105 - 3749726..3750295 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ABUS32_RS18110 - 3750687..3751607 (-) 921 WP_000084546.1 DMT family transporter -
  ABUS32_RS18115 - 3751713..3752363 (-) 651 WP_086225940.1 TetR/AcrR family transcriptional regulator -
  ABUS32_RS18120 - 3752500..3753714 (+) 1215 WP_000372841.1 MFS transporter -
  ABUS32_RS18125 - 3753736..3754500 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41779.31 Da        Isoelectric Point: 6.7528

>NTDB_id=1053269 ABUS32_RS18100 WP_049592564.1 3748545..3749675(+) (dprA) [Acinetobacter baumannii strain HvAb04]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTAGDSGYPSQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAGHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSHQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1053269 ABUS32_RS18100 WP_049592564.1 3748545..3749675(+) (dprA) [Acinetobacter baumannii strain HvAb04]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTTAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGGCAGGTGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCACATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGGACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCATCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

97.606

100

0.976

  dprA Acinetobacter baumannii D1279779

97.34

100

0.973

  dprA Acinetobacter baylyi ADP1

70.079

100

0.71

  dprA Vibrio cholerae strain A1552

42.598

88.032

0.375


Multiple sequence alignment