Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABUS32_RS18095 Genome accession   NZ_CP169805
Coordinates   3747370..3748524 (+) Length   384 a.a.
NCBI ID   WP_000755277.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HvAb04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3742370..3753524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS32_RS18070 - 3742522..3743736 (+) 1215 WP_001177954.1 oxygenase MpaB family protein -
  ABUS32_RS18075 - 3743806..3744012 (-) 207 WP_000182542.1 hypothetical protein -
  ABUS32_RS18080 - 3744066..3746180 (-) 2115 WP_001120685.1 TonB-dependent copper receptor -
  ABUS32_RS18085 - 3746252..3746680 (-) 429 WP_000231986.1 DUF2946 family protein -
  ABUS32_RS18090 def 3746717..3747247 (-) 531 WP_001196539.1 peptide deformylase -
  ABUS32_RS18095 tsaP 3747370..3748524 (+) 1155 WP_000755277.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABUS32_RS18100 dprA 3748545..3749675 (+) 1131 WP_049592564.1 DNA-processing protein DprA Machinery gene
  ABUS32_RS18105 - 3749726..3750295 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ABUS32_RS18110 - 3750687..3751607 (-) 921 WP_000084546.1 DMT family transporter -
  ABUS32_RS18115 - 3751713..3752363 (-) 651 WP_086225940.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42355.34 Da        Isoelectric Point: 8.5816

>NTDB_id=1053268 ABUS32_RS18095 WP_000755277.1 3747370..3748524(+) (tsaP) [Acinetobacter baumannii strain HvAb04]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQLQVRVEALNNSVPVIPLEHIKQWLE
SSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMLEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1053268 ABUS32_RS18095 WP_000755277.1 3747370..3748524(+) (tsaP) [Acinetobacter baumannii strain HvAb04]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTTTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACTACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AGCAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGTGATCGTGTTATGCTTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACTAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAAGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.698

100

0.987

Multiple sequence alignment