Detailed information NTG1052555

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ACETK2_RS20465
• Genome accession: NZ_CP169640
• Coordinates: 4556370..4557896 (+)
• Length: 508 a.a.
• NCBI ID: WP_015842126.1
• Uniprot ID: C6DHH5
• Organism: Pectobacterium aroidearum strain Pc3
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 4551370..4562896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACETK2_RS20445	-	4552806..4553732 (-)	927	WP_015842124.1	branched-chain amino acid transaminase	-
ACETK2_RS20450	ilvM	4553759..4554019 (-)	261	WP_010294673.1	acetolactate synthase 2 small subunit	-
ACETK2_RS20455	ilvG	4554077..4555723 (-)	1647	WP_015842125.1	acetolactate synthase 2 catalytic subunit	-
ACETK2_RS20460	ilvL	4555864..4555962 (-)	99	WP_071531109.1	ilv operon leader peptide	-
ACETK2_RS20465	comM	4556370..4557896 (+)	1527	WP_015842126.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
ACETK2_RS20470	-	4557953..4558291 (-)	339	WP_014701822.1	DUF413 domain-containing protein	-
ACETK2_RS20475	hdfR	4558412..4559239 (+)	828	WP_015842127.1	HTH-type transcriptional regulator HdfR	-
ACETK2_RS20480	yjfF	4559261..4560223 (-)	963	WP_015842128.1	galactofuranose ABC transporter, permease protein YjfF	-
ACETK2_RS20485	ytfT	4560223..4561233 (-)	1011	WP_015842129.1	galactofuranose ABC transporter, ATP-binding protein YtfT	-
ACETK2_RS20490	ytfR	4561220..4562740 (-)	1521	WP_015842130.1	galactofuranose ABC transporter, ATP-binding protein YtfR	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55425.94 Da
• Isoelectric Point: 6.6928

>NTDB_id=1052555 ACETK2_RS20465 WP_015842126.1 4556370..4557896(+) (comM) [Pectobacterium aroidearum strain Pc3]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRN
NIERKHIAEALSYRSMDRLLIQLHRSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=1052555 ACETK2_RS20465 WP_015842126.1 4556370..4557896(+) (comM) [Pectobacterium aroidearum strain Pc3]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCTTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGAGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAATCCGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAAGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCACAGTTCTTCTATGGCCGCGCTCGTGGGGGGAGGATCGTTGCCAAAACCTGGAGAAATCTCAC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGGCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGGGAAAGCAGCGCAACAATTCGCGAGCGCGTGCTAATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGCGAAATAGAACAACACTGTGCGTTAGAGGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACGATCGCTGACCTCGGCGATCGGAAC
AACATAGAGAGAAAGCATATTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

3D structure

• AlphaFold DB: C6DHH5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	63.834	99.606	0.636
comM	Vibrio cholerae strain A1552	63.817	99.016	0.632
comM	Glaesserella parasuis strain SC1401	63.116	99.803	0.63
comM	Vibrio campbellii strain DS40M4	62.648	99.606	0.624
comM	Legionella pneumophila str. Paris	50.299	98.622	0.496
comM	Legionella pneumophila strain ERS1305867	50.299	98.622	0.496
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	47.535	99.803	0.474