Detailed information NTG1052268

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ACE4RD_RS09440
• Genome accession: NZ_OZ059823
• Coordinates: 1891244..1892248 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005766.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate E2_22S00623-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1886244..1897248

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE4RD_RS09405	mreD	1886400..1886930 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
ACE4RD_RS09410	rplU	1887417..1887725 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
ACE4RD_RS09415	-	1887731..1888051 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACE4RD_RS09420	rpmA	1888063..1888347 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
ACE4RD_RS09425	obgE	1888836..1890128 (+)	1293	WP_000496090.1	GTPase ObgE	-
ACE4RD_RS09430	-	1890141..1890596 (+)	456	WP_000368902.1	ACT domain-containing protein	-
ACE4RD_RS09435	ruvA	1890610..1891212 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
ACE4RD_RS09440	ruvB	1891244..1892248 (+)	1005	WP_001005766.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ACE4RD_RS09445	queA	1892250..1893275 (+)	1026	WP_001019177.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
ACE4RD_RS09450	tgt	1893298..1894437 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
ACE4RD_RS09455	yajC	1894456..1894716 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37687.98 Da
• Isoelectric Point: 5.0865

>NTDB_id=1052268 ACE4RD_RS09440 WP_001005766.1 1891244..1892248(+) (ruvB) [Staphylococcus aureus isolate E2_22S00623-1]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=1052268 ACE4RD_RS09440 WP_001005766.1 1891244..1892248(+) (ruvB) [Staphylococcus aureus isolate E2_22S00623-1]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATTATTGCCAATGAAATGGAAGTAAAT
ATACGTACGGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTAGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATGCGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.644	97.605	0.641
ruvB	Streptococcus pneumoniae TIGR4	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae R6	57.576	98.802	0.569
ruvB	Streptococcus pneumoniae D39	57.576	98.802	0.569
ruvB	Helicobacter pylori 26695	56.173	97.006	0.545
ruvB	Synechocystis sp. PCC 6803	54.062	95.808	0.518