Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACE4RD_RS09435 Genome accession   NZ_OZ059823
Coordinates   1890610..1891212 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus isolate E2_22S00623-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1885610..1896212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RD_RS09405 mreD 1886400..1886930 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  ACE4RD_RS09410 rplU 1887417..1887725 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  ACE4RD_RS09415 - 1887731..1888051 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ACE4RD_RS09420 rpmA 1888063..1888347 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  ACE4RD_RS09425 obgE 1888836..1890128 (+) 1293 WP_000496090.1 GTPase ObgE -
  ACE4RD_RS09430 - 1890141..1890596 (+) 456 WP_000368902.1 ACT domain-containing protein -
  ACE4RD_RS09435 ruvA 1890610..1891212 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  ACE4RD_RS09440 ruvB 1891244..1892248 (+) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACE4RD_RS09445 queA 1892250..1893275 (+) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACE4RD_RS09450 tgt 1893298..1894437 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  ACE4RD_RS09455 yajC 1894456..1894716 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1052267 ACE4RD_RS09435 WP_000271547.1 1890610..1891212(+) (ruvA) [Staphylococcus aureus isolate E2_22S00623-1]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1052267 ACE4RD_RS09435 WP_000271547.1 1890610..1891212(+) (ruvA) [Staphylococcus aureus isolate E2_22S00623-1]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425