Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEWX4_RS01040 Genome accession   NZ_CP169369
Coordinates   219511..220998 (-) Length   495 a.a.
NCBI ID   WP_374855267.1    Uniprot ID   -
Organism   Acinetobacter indicus strain AIBD14     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 214511..225998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEWX4_RS01015 (ACEWX4_01015) - 214912..215298 (-) 387 WP_016659719.1 hypothetical protein -
  ACEWX4_RS01020 (ACEWX4_01020) - 215402..215803 (+) 402 WP_005181530.1 MAPEG family protein -
  ACEWX4_RS01025 (ACEWX4_01025) ppa 215921..216445 (+) 525 WP_016659718.1 inorganic diphosphatase -
  ACEWX4_RS01030 (ACEWX4_01030) - 216550..217911 (-) 1362 WP_180057055.1 OprD family outer membrane porin -
  ACEWX4_RS01035 (ACEWX4_01035) - 218672..219451 (+) 780 WP_103799959.1 TorF family putative porin -
  ACEWX4_RS01040 (ACEWX4_01040) comM 219511..220998 (-) 1488 WP_374855267.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEWX4_RS01045 (ACEWX4_01045) - 221068..221295 (-) 228 WP_016659711.1 accessory factor UbiK family protein -
  ACEWX4_RS01050 (ACEWX4_01050) glnK 221572..221910 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  ACEWX4_RS01055 (ACEWX4_01055) - 221973..223379 (+) 1407 WP_374855268.1 ammonium transporter -
  ACEWX4_RS01060 (ACEWX4_01060) nrdR 223519..223977 (+) 459 WP_005181550.1 transcriptional regulator NrdR -
  ACEWX4_RS01065 (ACEWX4_01065) ribD 224001..225089 (+) 1089 WP_168390940.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54091.09 Da        Isoelectric Point: 7.3353

>NTDB_id=1051042 ACEWX4_RS01040 WP_374855267.1 219511..220998(-) (comM) [Acinetobacter indicus strain AIBD14]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLSEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALTPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1051042 ACEWX4_RS01040 WP_374855267.1 219511..220998(-) (comM) [Acinetobacter indicus strain AIBD14]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGAGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCTCCGGCCGATTTGCCCAAAGATGGTTCGCGT
CTGGATTTACCGATTGCCTTAGGCATTTTGATTGCTTCCGGACAATTGTCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGCCCGGTCACCGGGACTTTAAGTATTGCCATTGCCTGTCAGGCGGCTGGCC
ATCAACTGGTATTACCGGAACCCAATGCGCAGGAAGCCGCACAACTGCCTGACTTTCAGGTGTTTGCAGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGCGCCCTAGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATACCCCACATCGCTTTGGACAGCGGCCATTTCGCGCCCC
ACATCATACCGCTTCAGCGATTGCACTGGTCGGTGGTGGCTCGCATCCGAAACCGGGCGAAATTACCCTGGCTCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAAGAA
ATTGTGATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AACCCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.4

100

0.519
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Vibrio cholerae strain A1552

50.909

100

0.509
  comM Vibrio campbellii strain DS40M4

50.707

100

0.507
  comM Legionella pneumophila str. Paris

50.202

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.202

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469

Multiple sequence alignment