Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   O1Q80_RS09685 Genome accession   NZ_CP169368
Coordinates   2045373..2046773 (+) Length   466 a.a.
NCBI ID   WP_386694756.1    Uniprot ID   -
Organism   Lonepinella sp. MS14435     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2040373..2051773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q80_RS09660 (O1Q80_01926) - 2040387..2042984 (-) 2598 WP_386694748.1 penicillin-binding protein 1A -
  O1Q80_RS09665 (O1Q80_01927) - 2043102..2043917 (+) 816 WP_386694750.1 hypothetical protein -
  O1Q80_RS09670 (O1Q80_01928) - 2043901..2044455 (+) 555 WP_386694752.1 competence protein B -
  O1Q80_RS09675 (O1Q80_01929) - 2044433..2044972 (+) 540 WP_386694753.1 competence protein -
  O1Q80_RS09680 (O1Q80_01930) - 2044974..2045363 (+) 390 WP_386694754.1 pilus assembly protein PilP -
  O1Q80_RS09685 (O1Q80_01931) comE 2045373..2046773 (+) 1401 WP_386694756.1 type IV pilus secretin PilQ Machinery gene
  O1Q80_RS09690 (O1Q80_01932) acpP 2046812..2047042 (-) 231 WP_115637124.1 acyl carrier protein -
  O1Q80_RS09695 (O1Q80_01933) fabG 2047282..2048010 (-) 729 WP_386687367.1 3-oxoacyl-ACP reductase FabG -
  O1Q80_RS09700 (O1Q80_01934) fabD 2048031..2048972 (-) 942 WP_386694758.1 ACP S-malonyltransferase -
  O1Q80_RS09705 (O1Q80_01935) - 2049023..2049973 (-) 951 WP_386694760.1 beta-ketoacyl-ACP synthase III -
  O1Q80_RS09710 (O1Q80_01936) plsX 2050015..2051034 (-) 1020 WP_386694762.1 phosphate acyltransferase PlsX -
  O1Q80_RS09715 (O1Q80_01937) rpmF 2051056..2051226 (-) 171 WP_132302023.1 50S ribosomal protein L32 -
  O1Q80_RS09720 (O1Q80_01938) yceD 2051244..2051768 (-) 525 WP_386694763.1 23S rRNA accumulation protein YceD -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50982.33 Da        Isoelectric Point: 6.1263

>NTDB_id=1051034 O1Q80_RS09685 WP_386694756.1 2045373..2046773(+) (comE) [Lonepinella sp. MS14435]
MNTLIYLLKFSLKCGLVWAIFFTSSYAEQPADLTFSIRLKQAPLVATLQQLALEQNANLIINDELTGTLSLQLENTTLDQ
LFHSVAKIKNLSLIKEKGIYYLNQENMPTNDGTGDFPAISDISAPIIEPLHTVTLKLHFAKASEVMKSLTTGNGSLLSGE
GSISFDDRSNLLIVKDNAQSIKNIRKLVKELDKPIEQIAIEARIVTITDESLQELGVRWGLFDPTSSSHKVAGSLAANGF
SNIADNLNVNFGAVNTPAGSLALQVAKINGRLLDLELTALERENNVKIIASPKLLTTNKKSASIKQGTEIPYVSTNEKSG
SQNVEFREAVLGLEVTPHISQDNAILLDLIVSQNSPGAAVQSGEGEVITIDKQEINTQVFAKDGETIVLGGVFQDTLSKG
VDKVPVLGDIPVVKHLFRKQNDKHQKRELVIFVTPHILKQGQSIQDFEKSRQKDNKIVESRGKLIE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1051034 O1Q80_RS09685 WP_386694756.1 2045373..2046773(+) (comE) [Lonepinella sp. MS14435]
ATGAACACCTTGATTTATCTATTAAAGTTTAGCCTAAAGTGCGGTTTAGTTTGGGCTATTTTTTTCACCAGCAGTTATGC
TGAACAACCCGCTGATCTCACTTTTTCAATTCGATTAAAACAAGCACCATTGGTAGCCACCTTGCAACAGCTCGCATTAG
AACAAAATGCGAATTTAATTATCAATGATGAACTCACAGGAACCTTATCCTTGCAATTAGAAAATACCACGCTCGATCAA
TTATTTCATTCTGTGGCAAAAATTAAAAATCTCTCCCTGATTAAAGAAAAAGGAATTTATTATCTGAATCAAGAAAATAT
GCCAACAAACGATGGTACAGGTGATTTTCCTGCAATATCTGATATATCTGCCCCAATCATAGAACCACTGCATACCGTTA
CTCTTAAATTACATTTTGCTAAAGCCTCAGAAGTGATGAAATCTTTAACCACTGGGAATGGATCTTTATTGTCTGGGGAA
GGTAGCATTAGCTTTGATGATCGCAGTAATTTATTAATTGTGAAAGACAATGCTCAGTCTATTAAAAATATCCGCAAGTT
AGTCAAAGAGTTAGATAAACCGATAGAACAAATTGCGATTGAAGCTCGCATTGTTACCATTACAGATGAAAGTTTACAAG
AATTAGGGGTTCGTTGGGGATTATTTGATCCAACTAGCAGTTCACATAAAGTGGCAGGAAGCCTTGCTGCCAATGGTTTT
AGCAATATTGCAGATAATTTAAATGTGAATTTCGGAGCAGTCAATACCCCTGCTGGTTCGCTGGCATTACAAGTGGCAAA
AATTAATGGGCGTTTATTAGATTTAGAATTAACCGCACTTGAGCGAGAAAATAACGTCAAAATTATTGCCAGCCCCAAAT
TACTTACCACTAACAAAAAATCAGCGAGCATTAAACAAGGTACTGAAATCCCTTATGTATCGACCAACGAAAAAAGCGGT
TCGCAAAATGTAGAATTTCGTGAAGCCGTATTAGGCTTAGAAGTAACTCCCCATATTTCACAAGATAATGCCATTTTGTT
GGATCTTATCGTCAGCCAAAATTCGCCTGGAGCAGCAGTACAATCTGGTGAAGGAGAGGTGATCACCATTGATAAACAAG
AAATTAACACGCAAGTATTTGCCAAAGATGGCGAAACCATTGTATTAGGTGGTGTATTTCAAGATACATTAAGTAAAGGT
GTCGATAAAGTCCCTGTATTAGGTGATATTCCTGTGGTAAAACATCTATTCCGTAAACAAAATGATAAACACCAGAAACG
AGAATTAGTCATTTTTGTTACCCCACATATTTTAAAACAAGGACAATCTATTCAAGATTTTGAGAAGAGTCGCCAGAAAG
ACAACAAAATTGTCGAAAGCAGAGGGAAGTTAATTGAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(133-197)

Bacterial type II and III secretion system protein (Secretin)

(279-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

63.535

95.923

0.609
  comE Haemophilus influenzae 86-028NP

63.864

94.421

0.603
  comE Glaesserella parasuis strain SC1401

55.012

87.768

0.483
  pilQ Vibrio campbellii strain DS40M4

39.954

92.918

0.371
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.706

91.202

0.371
  pilQ Vibrio cholerae strain A1552

40.706

91.202

0.371

Multiple sequence alignment