Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O1Q80_RS00655 Genome accession   NZ_CP169368
Coordinates   137251..138786 (+) Length   511 a.a.
NCBI ID   WP_386696115.1    Uniprot ID   -
Organism   Lonepinella sp. MS14435     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 132251..143786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q80_RS00630 (O1Q80_00127) - 133412..134422 (+) 1011 WP_386695067.1 hypothetical protein -
  O1Q80_RS00635 (O1Q80_00128) - 134525..134716 (+) 192 WP_386695068.1 hypothetical protein -
  O1Q80_RS00640 (O1Q80_00129) - 134729..135754 (+) 1026 WP_386695069.1 hypothetical protein -
  O1Q80_RS00645 (O1Q80_00130) - 135857..136048 (+) 192 WP_386695071.1 hypothetical protein -
  O1Q80_RS00650 (O1Q80_00131) - 136061..137092 (+) 1032 WP_386695073.1 hypothetical protein -
  O1Q80_RS00655 (O1Q80_00132) comM 137251..138786 (+) 1536 WP_386696115.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O1Q80_RS00660 (O1Q80_00133) - 138884..139378 (-) 495 WP_386688367.1 YfbU family protein -
  O1Q80_RS00665 (O1Q80_00134) - 139389..140153 (-) 765 WP_386695075.1 VacJ family lipoprotein -
  O1Q80_RS00670 (O1Q80_00135) carA 140418..141545 (+) 1128 WP_386695077.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  O1Q80_RS00675 (O1Q80_00136) - 141552..142208 (+) 657 WP_386695078.1 Fic family protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56176.60 Da        Isoelectric Point: 9.3518

>NTDB_id=1051013 O1Q80_RS00655 WP_386696115.1 137251..138786(+) (comM) [Lonepinella sp. MS14435]
MSLAIVYSRASIGVQAPLVTIEVHISNGKPNFVLVGLPEKTVKEAQDRVRSALINAQFKYPPKRITVNLAPADLPKEGGR
FDLPIALGILAASGQINAEQLRQFEFLGELALTGNLRGVQGVIPAILAAQKAKRTMIIAPQNANEASLISEHDSYYADSL
LEVVQFLDNQLNLPTASQMADQIRSNAKQSAVQNSKDLTDIIGQHHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTD
LLPEMSDQEAIETASVTSLIQNELNFANWKKRPFRCPHHSASLPALVGGGSIPKPGEISLAHNGILFLDELPEFERKVLD
ALRQPLESGEIVISRATAKIQFPAKFQLVAAMNPSPTGHYQGSHNRTSPQQIIRYLNRLSGPFLDRFDLSIEVPLLPQGA
LQSQEDRGESSEQVRLKIVKVRERQFARQGKVNAHLTSKEIERYCPLLEKDAIFLENALTKLGLSVRAYHRILKVSRTIA
DLAESEQITQAHLAEALGYRTMDRLLLKLHE

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1051013 O1Q80_RS00655 WP_386696115.1 137251..138786(+) (comM) [Lonepinella sp. MS14435]
ATGTCGTTAGCCATTGTTTATAGCCGTGCCTCTATCGGGGTACAAGCCCCCCTTGTGACCATCGAAGTCCATATTAGCAA
TGGTAAACCAAATTTTGTGCTAGTGGGATTACCAGAAAAAACCGTGAAAGAAGCACAGGATCGCGTGAGAAGTGCCTTGA
TTAATGCACAATTTAAATATCCTCCAAAACGTATTACCGTTAATCTTGCCCCAGCAGATTTACCTAAAGAGGGGGGACGT
TTTGATTTGCCGATAGCGTTGGGGATTTTGGCAGCATCAGGGCAAATTAATGCGGAACAATTACGTCAATTTGAATTTCT
TGGGGAACTGGCATTAACGGGGAATTTACGTGGTGTGCAAGGGGTTATTCCTGCTATTTTGGCGGCTCAAAAAGCGAAAA
GAACCATGATTATTGCCCCACAAAATGCCAATGAGGCATCTCTCATCTCAGAACACGACAGTTATTATGCAGATTCACTG
TTAGAAGTGGTGCAGTTTCTCGATAATCAATTAAATTTGCCAACAGCTAGTCAAATGGCAGATCAAATTAGGTCAAATGC
CAAGCAAAGTGCGGTGCAAAATAGCAAAGATTTAACCGATATTATCGGGCAACATCATGCCAAACGAGCCTTAACCATTG
CCGCTGCTGGGCAACATAACTTACTTTTATTAGGTCCACCAGGAACAGGCAAAACCATGCTCGCTAGTCGATTAACCGAT
CTTTTACCCGAAATGAGTGATCAAGAAGCCATAGAAACCGCCTCTGTGACTAGCCTGATTCAAAATGAACTGAATTTTGC
GAATTGGAAGAAACGCCCATTCCGTTGCCCACATCATAGTGCATCTTTGCCTGCGTTAGTGGGAGGGGGATCGATCCCAA
AACCTGGCGAAATTTCATTAGCTCACAATGGCATTCTTTTTCTTGATGAGTTGCCCGAGTTTGAGCGGAAAGTATTAGAT
GCTTTACGCCAACCCTTAGAAAGTGGTGAAATAGTTATCTCTCGTGCCACCGCTAAGATTCAATTTCCCGCTAAATTTCA
ATTAGTTGCTGCTATGAATCCAAGTCCAACAGGACATTATCAAGGTTCTCATAATCGCACATCACCACAACAAATTATCC
GTTATTTGAATCGGTTATCAGGACCTTTTTTAGATCGCTTTGATTTATCTATTGAAGTCCCCTTGTTACCACAGGGTGCA
TTACAAAGCCAAGAAGATCGGGGTGAAAGCAGCGAACAAGTGCGGTTAAAAATTGTTAAGGTACGCGAAAGACAATTCGC
TCGACAAGGTAAAGTGAATGCTCATTTAACCAGTAAAGAAATTGAACGTTATTGCCCGTTATTAGAAAAAGATGCGATTT
TTTTGGAAAATGCCCTAACTAAACTAGGTTTATCGGTACGAGCTTATCATCGTATTCTCAAGGTTTCTCGCACCATTGCA
GATTTGGCAGAGTCGGAACAAATTACGCAAGCCCATTTAGCCGAAGCCTTGGGGTATCGTACTATGGATCGGTTATTATT
GAAATTACATGAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-398)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

79.568

99.609

0.793
  comM Glaesserella parasuis strain SC1401

75.93

100

0.759
  comM Vibrio cholerae strain A1552

66.012

99.609

0.658
  comM Vibrio campbellii strain DS40M4

64.188

100

0.642
  comM Legionella pneumophila str. Paris

51.292

98.434

0.505
  comM Legionella pneumophila strain ERS1305867

51.292

98.434

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.228

100

0.468

Multiple sequence alignment