Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O1Q82_RS08905 Genome accession   NZ_CP169367
Coordinates   1891214..1892434 (-) Length   406 a.a.
NCBI ID   WP_386687254.1    Uniprot ID   -
Organism   Lonepinella sp. MS14437     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1886214..1897434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q82_RS08875 (O1Q82_01771) menH 1886745..1887506 (-) 762 WP_386687244.1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase -
  O1Q82_RS08880 (O1Q82_01772) - 1887631..1888998 (-) 1368 WP_386687246.1 alanine/glycine:cation symporter family protein -
  O1Q82_RS08885 (O1Q82_01773) - 1889411..1889677 (-) 267 WP_386687248.1 GNAT family N-acetyltransferase -
  O1Q82_RS08890 (O1Q82_01774) yacG 1889680..1889880 (-) 201 WP_132301902.1 DNA gyrase inhibitor YacG -
  O1Q82_RS08895 (O1Q82_01775) coaE 1889864..1890493 (-) 630 WP_386687251.1 dephospho-CoA kinase -
  O1Q82_RS08900 (O1Q82_01776) - 1890519..1891181 (-) 663 WP_386687252.1 prepilin peptidase -
  O1Q82_RS08905 (O1Q82_01777) pilC 1891214..1892434 (-) 1221 WP_386687254.1 type II secretion system F family protein Machinery gene
  O1Q82_RS08910 (O1Q82_01778) pilB 1892444..1893892 (-) 1449 WP_386687256.1 GspE/PulE family protein Machinery gene
  O1Q82_RS08915 (O1Q82_01779) pilA 1893892..1894377 (-) 486 WP_386687258.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1Q82_RS08920 (O1Q82_01780) ampD 1894522..1895067 (+) 546 WP_386687260.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  O1Q82_RS08925 (O1Q82_01781) - 1895071..1895721 (+) 651 WP_386687262.1 HAD family hydrolase -
  O1Q82_RS08930 (O1Q82_01782) - 1895973..1896242 (+) 270 WP_153984892.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46171.03 Da        Isoelectric Point: 10.0264

>NTDB_id=1051004 O1Q82_RS08905 WP_386687254.1 1891214..1892434(-) (pilC) [Lonepinella sp. MS14437]
MKLKMYRWQGINRLNQKQKGVLIAESEQIARQQLLNRGLQQIKLQQNWQLSTKPNQAEICDTLLQLAILLKSSVPLKNSL
LILLQNCTNIQLNLWLHQLLNQLETGLSFSQALQNQGQFLTLQERQLIQVGEMTGKLATVCNQIAEHRQQSVALQRKLQK
ILLYPMMVLGISVILTALLLIFIVPQFADMYGDNQAQLPFFTQVLLFLSVLLQQYFWLIVVLIVGIIVLIKRQLKSSIWL
NQLKIKLISNTPILGNIVQLSRLVGFCRGLHLMLKSGVPLNQALQSFLPQKKTWQNKIELQGDLTLIQEIQSMLHWITQG
YAFSVAVGAELFPIQAQQMLQVGEQSGQLSQMLLHIAESYQQQLDHKIDLLSQMLEPLLMVVIGGLIGLIMLGMYLPIFN
MGSLIQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1051004 O1Q82_RS08905 WP_386687254.1 1891214..1892434(-) (pilC) [Lonepinella sp. MS14437]
ATGAAACTCAAAATGTACCGCTGGCAAGGTATTAATCGGTTAAATCAAAAACAAAAAGGCGTTTTAATTGCTGAAAGTGA
ACAAATCGCACGTCAACAATTATTAAACCGAGGTTTACAGCAAATTAAATTACAGCAAAACTGGCAATTATCCACTAAAC
CGAATCAGGCAGAAATTTGTGATACCTTATTACAATTAGCAATTTTATTAAAATCTTCTGTTCCGTTAAAAAATAGCTTA
TTGATTTTATTGCAAAATTGTACCAATATTCAGTTAAATTTGTGGTTACATCAGCTATTAAATCAACTTGAAACAGGGTT
GTCTTTTTCTCAGGCATTACAGAATCAAGGGCAATTTTTAACATTACAAGAACGCCAATTAATTCAAGTCGGTGAAATGA
CGGGTAAACTGGCAACGGTGTGTAATCAAATTGCCGAGCATCGTCAACAATCGGTGGCATTACAACGAAAATTGCAGAAA
ATCTTGTTGTATCCGATGATGGTACTCGGTATTTCCGTGATATTGACCGCACTTTTACTGATTTTTATTGTGCCACAATT
TGCCGATATGTATGGTGATAATCAAGCTCAACTACCGTTCTTCACCCAAGTTTTATTATTTTTATCGGTACTGTTACAGC
AATATTTCTGGCTAATTGTTGTGCTGATTGTTGGCATTATTGTTCTGATTAAACGTCAATTAAAATCATCGATCTGGCTG
AATCAACTCAAGATAAAATTAATCTCTAACACCCCCATATTAGGCAATATTGTACAACTTTCTAGGTTGGTAGGATTTTG
TCGTGGCTTGCATTTAATGCTGAAATCAGGTGTGCCATTAAATCAGGCATTGCAGTCATTTTTACCCCAAAAGAAAACTT
GGCAAAACAAGATCGAATTACAAGGGGATTTAACTTTAATTCAAGAAATTCAGTCTATGCTTCATTGGATTACACAAGGC
TATGCTTTTTCAGTAGCAGTGGGAGCAGAATTATTTCCGATACAAGCTCAACAAATGTTGCAGGTAGGTGAGCAATCGGG
ACAACTTTCACAAATGTTACTGCATATTGCAGAGAGTTATCAGCAACAGCTCGATCATAAAATTGATCTGCTTTCACAAA
TGTTAGAGCCATTGTTAATGGTGGTGATTGGTGGACTGATTGGTTTGATTATGTTGGGAATGTATTTGCCGATCTTTAAT
ATGGGTTCGTTAATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

59.852

100

0.599
  pilC Haemophilus influenzae 86-028NP

59.606

100

0.596
  pilC Glaesserella parasuis strain SC1401

40.15

98.768

0.397

Multiple sequence alignment