Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O1Q82_RS00670 Genome accession   NZ_CP169367
Coordinates   132126..133661 (+) Length   511 a.a.
NCBI ID   WP_386690172.1    Uniprot ID   -
Organism   Lonepinella sp. MS14437     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 127126..138661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q82_RS00645 (O1Q82_00130) - 128075..128266 (+) 192 WP_386688357.1 hypothetical protein -
  O1Q82_RS00650 (O1Q82_00131) - 128279..129289 (+) 1011 WP_386688359.1 hypothetical protein -
  O1Q82_RS00655 - 129411..130735 (+) 1325 WP_386688361.1 IS3 family transposase -
  O1Q82_RS00660 (O1Q82_00134) - 130840..130992 (+) 153 WP_386688363.1 hypothetical protein -
  O1Q82_RS00665 (O1Q82_00135) - 131005..131967 (+) 963 WP_386688365.1 hypothetical protein -
  O1Q82_RS00670 (O1Q82_00136) comM 132126..133661 (+) 1536 WP_386690172.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O1Q82_RS00675 (O1Q82_00137) - 133759..134253 (-) 495 WP_386688367.1 YfbU family protein -
  O1Q82_RS00680 (O1Q82_00138) - 134264..135028 (-) 765 WP_386688370.1 VacJ family lipoprotein -
  O1Q82_RS00685 (O1Q82_00139) carA 135293..136420 (+) 1128 WP_386688372.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  O1Q82_RS00690 (O1Q82_00140) - 136427..137083 (+) 657 WP_386688374.1 Fic family protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56161.63 Da        Isoelectric Point: 9.6535

>NTDB_id=1050987 O1Q82_RS00670 WP_386690172.1 132126..133661(+) (comM) [Lonepinella sp. MS14437]
MSLAIVYSRASIGVQAPLVTIEVHISNGKPNFVLVGLPEKTVKEAQDRVRSALINAQFKYPPKRITVNLAPADLPKEGGR
FDLPIALGILAASGQINAEQLRQFEFLGELALTGNLRGVQGVIPAILAAQKAKRTMIIAPQNANEASLISEHDSYYANSL
LEVVQFLDKQLNLPTASQMADQIRSNAKQSAVQNSKDLTDIIGQHHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTD
LLPEMSDQEAIETASVTSLIQNELNFANWKKRPFRCPHHSASLPALVGGGSIPKPGEISLAHNGILFLDELPEFERKVLD
ALRQPLESGEIVISRATAKIQFPAKFQLVAAMNPSPTGHYQGSHNRTSPQQIIRYLNRLSGPFLDRFDLSIEVPLLPQGA
LQSQQDRGESSEQVRLKIVTVRERQFARQGKVNAHLTSKEIERYCPLLEKDAIFLENALTKLGLSVRAYHRILKVSRTIA
DLAESEQITQAHLAEALGYRTMDRLLLKLHE

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1050987 O1Q82_RS00670 WP_386690172.1 132126..133661(+) (comM) [Lonepinella sp. MS14437]
ATGTCGTTAGCCATTGTTTATAGCCGTGCCTCTATCGGGGTACAAGCCCCCCTTGTGACCATCGAAGTCCATATTAGCAA
TGGTAAACCAAATTTTGTGCTAGTGGGATTACCAGAAAAAACCGTGAAAGAAGCACAGGATCGCGTGAGAAGTGCCTTGA
TTAATGCACAATTTAAATATCCTCCAAAACGTATTACCGTTAATCTTGCCCCAGCAGATTTACCTAAAGAGGGGGGACGT
TTTGATTTGCCGATAGCGTTGGGGATTTTGGCAGCATCAGGGCAAATTAATGCGGAACAATTACGTCAATTTGAATTTCT
TGGGGAACTGGCATTAACGGGGAATTTACGTGGTGTGCAAGGAGTTATTCCTGCTATTTTAGCGGCTCAGAAAGCGAAAA
GAACCATGATTATTGCCCCGCAAAATGCCAATGAAGCATCTCTCATCTCAGAACACGACAGTTATTACGCAAATTCACTG
TTAGAAGTGGTGCAGTTTCTCGACAAGCAATTAAATTTGCCAACGGCTAGTCAAATGGCAGACCAAATTAGGTCAAATGC
CAAGCAAAGTGCGGTGCAAAATAGCAAAGATTTAACCGATATTATCGGGCAACATCATGCCAAACGAGCCTTAACCATTG
CCGCTGCTGGGCAACATAACTTACTTTTATTAGGTCCCCCAGGGACTGGCAAAACCATGCTTGCCAGTCGATTAACCGAT
CTCTTGCCCGAAATGAGTGATCAAGAAGCCATAGAAACCGCCTCTGTGACTAGCCTGATTCAAAATGAACTGAATTTTGC
GAATTGGAAGAAACGCCCATTCCGTTGCCCACATCATAGTGCATCTTTGCCTGCGTTAGTGGGAGGGGGATCGATCCCAA
AACCTGGCGAAATTTCATTAGCTCACAATGGCATTCTTTTTCTTGATGAGTTGCCCGAGTTTGAACGTAAAGTATTAGAT
GCTTTACGCCAACCCTTAGAAAGTGGTGAAATAGTTATCTCTCGTGCCACTGCTAAAATCCAATTTCCCGCTAAATTTCA
ATTAGTTGCTGCTATGAATCCAAGTCCAACAGGACATTATCAAGGTTCTCATAATCGCACATCACCACAACAAATTATCC
GTTATTTGAATCGGTTATCAGGACCTTTTTTAGATCGCTTTGATTTATCTATTGAAGTCCCCTTGTTACCACAGGGTGCG
TTACAAAGCCAACAAGATCGGGGTGAAAGCAGCGAACAAGTGCGGTTAAAAATTGTTACGGTACGCGAAAGACAATTCGC
TCGACAGGGTAAAGTTAATGCTCATTTAACCAGCAAAGAAATTGAACGTTATTGCCCATTATTAGAAAAAGATGCGATTT
TTTTGGAAAATGCCCTAACTAAACTAGGTTTATCGGTACGAGCTTATCATCGTATTCTCAAGGTTTCTCGCACCATTGCA
GATTTGGCAGAGTCGGAACAAATTACGCAAGCCCATTTAGCCGAAGCCTTGGGGTATCGTACTATGGATCGGTTATTATT
GAAATTACATGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-398)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

79.371

99.609

0.791
  comM Glaesserella parasuis strain SC1401

75.734

100

0.757
  comM Vibrio cholerae strain A1552

66.012

99.609

0.658
  comM Vibrio campbellii strain DS40M4

64.188

100

0.642
  comM Legionella pneumophila str. Paris

51.292

98.434

0.505
  comM Legionella pneumophila strain ERS1305867

51.292

98.434

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.035

100

0.466

Multiple sequence alignment