Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEVB2_RS05300 Genome accession   NZ_CP169223
Coordinates   1087342..1088871 (+) Length   509 a.a.
NCBI ID   WP_316729594.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. gallicida strain W24_252     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1082342..1093871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEVB2_RS05270 (ACEVB2_05270) - 1082628..1084148 (+) 1521 WP_374091860.1 surface lipoprotein assembly modifier -
  ACEVB2_RS05275 (ACEVB2_05275) - 1084203..1084529 (-) 327 WP_005757699.1 HigA family addiction module antitoxin -
  ACEVB2_RS05280 (ACEVB2_05280) - 1084602..1084928 (-) 327 WP_203331380.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACEVB2_RS05285 (ACEVB2_05285) trmL 1085086..1085562 (+) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  ACEVB2_RS05290 (ACEVB2_05290) - 1085637..1086506 (-) 870 WP_014668443.1 VirK/YbjX family protein -
  ACEVB2_RS05295 (ACEVB2_05295) yihA 1086617..1087234 (+) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACEVB2_RS05300 (ACEVB2_05300) comM 1087342..1088871 (+) 1530 WP_316729594.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEVB2_RS05305 (ACEVB2_05305) - 1088925..1089611 (-) 687 WP_316729593.1 hypothetical protein -
  ACEVB2_RS05310 (ACEVB2_05310) - 1089632..1090474 (-) 843 WP_316729592.1 divergent polysaccharide deacetylase family protein -
  ACEVB2_RS05315 (ACEVB2_05315) envC 1090471..1091700 (-) 1230 WP_316729591.1 murein hydrolase activator EnvC -
  ACEVB2_RS05320 (ACEVB2_05320) - 1091883..1092566 (+) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55916.32 Da        Isoelectric Point: 9.6874

>NTDB_id=1049899 ACEVB2_RS05300 WP_316729594.1 1087342..1088871(+) (comM) [Pasteurella multocida subsp. gallicida strain W24_252]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHSTLPLASDLPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1049899 ACEVB2_RS05300 WP_316729594.1 1087342..1088871(+) (comM) [Pasteurella multocida subsp. gallicida strain W24_252]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAGCAATTTGAATTTGT
GGGTGAGTTAGCGCTAACTGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATTCCACGTTACCTTTAGCCTCAGACCTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAGCGCCCATTTCGTGCCCCTCATCACAGTGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGAG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTTGATGAGTTACCGGAATTTGAACGCAAAGTATTGGATGCCTTACGC
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTACGTTATCTCA
ATCGCTTATCCGGTCCATTTTTAGATCGGTTTGATTTGTCAATCGAAGTCCCTTTACTCCCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGCGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAGA
ATGCCTTAGCCAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGTCAAATTCAACAATGCCACCTCGCCGAAGCACTAGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.615

99.607

0.843
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.748

99.804

0.656
  comM Legionella pneumophila str. Paris

51.6

98.232

0.507
  comM Legionella pneumophila strain ERS1305867

51.6

98.232

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47

Multiple sequence alignment