Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACEUIV_RS19250 Genome accession   NZ_CP169221
Coordinates   4185726..4186793 (-) Length   355 a.a.
NCBI ID   WP_026948241.1    Uniprot ID   A0A9Q3W3F5
Organism   Alloalcanivorax xenomutans strain A28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4180726..4191793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUIV_RS19225 aroK 4181217..4181753 (-) 537 WP_026948240.1 shikimate kinase AroK -
  ACEUIV_RS19230 pilQ 4181750..4183900 (-) 2151 WP_022995173.1 type IV pilus secretin PilQ Machinery gene
  ACEUIV_RS19235 - 4183921..4184454 (-) 534 WP_022995172.1 pilus assembly protein PilP -
  ACEUIV_RS19240 - 4184472..4185158 (-) 687 WP_022995171.1 type 4a pilus biogenesis protein PilO -
  ACEUIV_RS19245 - 4185145..4185729 (-) 585 WP_022995170.1 PilN domain-containing protein -
  ACEUIV_RS19250 pilM 4185726..4186793 (-) 1068 WP_026948241.1 pilus assembly protein PilM Machinery gene
  ACEUIV_RS19255 - 4187128..4189653 (+) 2526 WP_022995168.1 penicillin-binding protein 1A -
  ACEUIV_RS19260 - 4189684..4190979 (-) 1296 WP_026948242.1 DKNYY domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38403.89 Da        Isoelectric Point: 4.3939

>NTDB_id=1049886 ACEUIV_RS19250 WP_026948241.1 4185726..4186793(-) (pilM) [Alloalcanivorax xenomutans strain A28]
MLPFLRKKAQAMLGVDISSTAVKLLELSRSGGRFKVESYAVEPLTANTVVEKNITDVEGVGDVIARVVARARPGVKAAAV
AVPGSATITKVIEMDASLSEDDMETQLRVEADQYIPFPLDEVRMDFQVLGATEDTPDRVEVLVVASRTENVEMRADALEI
GNLQAKVVDVEAYAMERAFQLVAPTLPNADELETVAVFDIGATMTTLNVFHQGRSVYTREQLFGGKQLTEEIQRRYGISM
EEAGLAKKTGELPEDYESEVLQPFKDAIVQQINRSLQFFYGSTQFNQVDYILLAGGSASITGLPALIQDKVGAGCSLADP
FAGMSKAGKVNVRALANDAPAMMIACGLALRSFEL

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1049886 ACEUIV_RS19250 WP_026948241.1 4185726..4186793(-) (pilM) [Alloalcanivorax xenomutans strain A28]
GTGCTGCCTTTTCTAAGAAAAAAGGCCCAAGCCATGCTGGGGGTCGATATCAGTTCCACCGCCGTGAAGCTGCTGGAGCT
ATCCAGGTCCGGGGGGCGCTTCAAGGTCGAGAGCTACGCCGTCGAGCCGCTCACGGCCAATACCGTGGTGGAAAAAAACA
TCACTGATGTGGAAGGGGTCGGGGACGTGATCGCCCGGGTGGTCGCCCGGGCCCGTCCCGGGGTCAAGGCCGCTGCCGTG
GCGGTGCCGGGCTCGGCCACCATCACCAAGGTGATCGAAATGGACGCCTCGCTCAGCGAGGACGATATGGAAACGCAATT
GCGGGTGGAGGCGGACCAGTACATTCCATTCCCGCTGGATGAAGTGCGCATGGATTTTCAGGTGCTCGGCGCCACCGAGG
ATACGCCCGACCGGGTGGAAGTTCTGGTGGTGGCGTCGCGCACGGAAAATGTGGAGATGCGCGCCGATGCTCTGGAGATC
GGTAACCTTCAGGCCAAGGTGGTGGACGTGGAGGCCTACGCCATGGAGCGGGCCTTCCAACTGGTGGCGCCGACCCTGCC
CAACGCCGATGAACTGGAAACGGTGGCGGTGTTCGATATCGGCGCCACCATGACCACTCTCAATGTGTTCCATCAGGGGC
GCAGCGTCTATACCCGCGAGCAACTGTTCGGCGGCAAGCAGCTCACCGAGGAAATTCAGCGCCGTTACGGCATCTCCATG
GAGGAGGCCGGGCTGGCGAAGAAAACCGGTGAATTGCCGGAGGACTATGAGAGCGAGGTGCTGCAGCCGTTCAAGGACGC
CATCGTCCAGCAGATCAACCGGTCCCTGCAGTTCTTCTATGGATCCACCCAGTTCAATCAGGTGGATTACATCCTGCTGG
CTGGCGGTTCGGCTTCCATCACCGGATTGCCGGCGCTGATCCAGGACAAGGTGGGTGCCGGGTGTTCCCTGGCCGATCCC
TTCGCCGGTATGAGCAAGGCCGGCAAGGTCAATGTCCGGGCCCTGGCCAACGACGCCCCGGCGATGATGATCGCCTGCGG
CCTGGCGCTGAGGAGCTTTGAACTATGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.65

99.718

0.555
  comM Acinetobacter nosocomialis M2

55.65

99.718

0.555
  comM Acinetobacter baylyi ADP1

52.542

99.718

0.524
  pilM Legionella pneumophila strain ERS1305867

46.893

99.718

0.468

Multiple sequence alignment