Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEJ41_RS12315 Genome accession   NZ_CP169056
Coordinates   2697571..2699085 (+) Length   504 a.a.
NCBI ID   WP_374012553.1    Uniprot ID   -
Organism   Pseudoxanthomonas koreensis strain TDY-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2692571..2704085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEJ41_RS12290 (ACEJ41_12290) speA 2692962..2694845 (-) 1884 WP_374012549.1 arginine decarboxylase -
  ACEJ41_RS12295 (ACEJ41_12295) speE 2694999..2695859 (+) 861 WP_374012550.1 polyamine aminopropyltransferase -
  ACEJ41_RS12300 (ACEJ41_12300) - 2696060..2696725 (+) 666 WP_374012551.1 phosphotransferase -
  ACEJ41_RS12305 (ACEJ41_12305) - 2696757..2697095 (-) 339 WP_162310641.1 P-II family nitrogen regulator -
  ACEJ41_RS12310 (ACEJ41_12310) - 2697285..2697560 (+) 276 WP_374012552.1 accessory factor UbiK family protein -
  ACEJ41_RS12315 (ACEJ41_12315) comM 2697571..2699085 (+) 1515 WP_374012553.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEJ41_RS12320 (ACEJ41_12320) - 2699111..2700145 (-) 1035 WP_374012554.1 diguanylate cyclase domain-containing protein -
  ACEJ41_RS12325 (ACEJ41_12325) - 2700284..2700844 (-) 561 WP_374014145.1 lysophospholipid acyltransferase family protein -
  ACEJ41_RS12330 (ACEJ41_12330) arfB 2700889..2701320 (-) 432 WP_374012555.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  ACEJ41_RS12335 (ACEJ41_12335) - 2701362..2702411 (-) 1050 WP_374012556.1 CDP-glycerol glycerophosphotransferase -
  ACEJ41_RS12340 (ACEJ41_12340) - 2702458..2703243 (+) 786 WP_374014146.1 glycosyltransferase family 2 protein -
  ACEJ41_RS12345 (ACEJ41_12345) - 2703439..2703792 (-) 354 WP_374012557.1 hypothetical protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53271.99 Da        Isoelectric Point: 8.6730

>NTDB_id=1049608 ACEJ41_RS12315 WP_374012553.1 2697571..2699085(+) (comM) [Pseudoxanthomonas koreensis strain TDY-1]
MSLALVHSRARSGIHAPPVQVEVHLGGGLPSTQIVGLPAAAVRESRDRVRAAILCAQFEYPQRRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRNTLADCEFLGELGLTGELRPVDGILPAVLAATRDGRRLVVPAGSGAEAALAPQAQAYTARTL
LEACAALGGRTELPRAQAPAHVTSLAAADMADVRGQAQARRVLEVAAAGGHHLLMSGPPGCGKTLLASRLPGLLPEASES
EALETAAVVSTSGRGLDPTRWRQRPWRSPHHGASAVALTGGGNPPRPGEISLAHNGVLFLDELPEWSRAALEVLREPLES
GRITVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCTPDIIRRYWSRLSGPLLDRIDLHLAMARLPLALLRPDAP
PGESTRSIRTRVEAARTRQLQRNGRLSAHLDPADVAASCRLTAADQDLLEQAGERLQLSARSLHRVLRVARTIADLDGSD
AIATPHLAEALGYRMPAPTCAVPA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1049608 ACEJ41_RS12315 WP_374012553.1 2697571..2699085(+) (comM) [Pseudoxanthomonas koreensis strain TDY-1]
GTGAGCCTGGCGCTGGTGCACAGCCGCGCCCGGTCCGGGATCCACGCACCGCCGGTCCAGGTCGAGGTCCATCTTGGCGG
CGGCCTGCCCAGCACCCAGATCGTCGGCCTGCCGGCCGCGGCAGTGCGCGAATCGCGCGACCGCGTGCGCGCGGCGATCC
TGTGCGCGCAGTTCGAATACCCGCAGCGCCGGATCACCATCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCCCTGGGGATCCTCGCGGCAAGCGGCCAGATCGACCGCAACACCCTGGCCGATTGCGAGTTCCT
CGGCGAGCTGGGATTGACCGGCGAGCTGCGCCCGGTCGACGGGATCCTGCCCGCGGTACTTGCCGCCACGCGTGACGGGC
GCCGGCTGGTGGTACCGGCCGGCAGCGGCGCCGAGGCCGCGCTGGCGCCGCAGGCCCAGGCCTATACCGCACGCACCTTG
CTGGAAGCCTGCGCCGCGCTGGGCGGCCGCACCGAACTGCCGCGCGCGCAGGCACCGGCCCACGTGACCTCGCTGGCCGC
GGCGGACATGGCCGATGTGCGTGGGCAAGCCCAGGCGCGGCGCGTGCTGGAAGTGGCTGCGGCTGGCGGCCATCACCTGC
TGATGAGCGGACCGCCCGGTTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGCTGCTGCCGGAGGCCAGCGAATCC
GAAGCCCTGGAAACCGCGGCGGTGGTCTCCACCAGCGGCCGCGGCCTGGACCCGACGCGCTGGCGCCAGCGCCCCTGGCG
CAGCCCGCACCACGGCGCCAGCGCGGTGGCCCTGACCGGTGGCGGCAATCCCCCGCGGCCGGGCGAGATCTCGCTGGCGC
ACAACGGCGTGCTGTTCCTCGATGAATTGCCCGAATGGAGCCGGGCCGCGCTGGAAGTCCTGCGCGAGCCGCTGGAATCG
GGCCGGATCACCGTGTCACGGGCCGCGCGCAGCGCCGAGTTCCCGGCCAGGTTCCAGCTGGTGGCCGCCATGAACCCGTG
CCCGTGCGGCTGGGCCGGCGATCCCTCCGGGCGCTGCCGCTGCACCCCGGACATCATCCGCCGCTACTGGAGCCGGCTGT
CCGGGCCGTTGCTGGACCGCATCGACCTGCACCTGGCCATGGCCCGGCTGCCGCTGGCACTGCTGCGGCCCGATGCCCCG
CCCGGCGAATCCACCCGGAGCATCCGCACGCGGGTCGAGGCGGCACGCACGCGCCAGCTGCAACGCAACGGCCGGCTCAG
CGCACACCTGGACCCGGCGGACGTGGCCGCCAGCTGCCGCCTGACCGCGGCCGACCAGGACCTGCTCGAACAGGCCGGCG
AACGCCTGCAGCTGAGCGCGCGCAGCCTGCATCGGGTGTTGCGGGTGGCGCGCACCATTGCCGACCTCGACGGCAGCGAC
GCGATCGCCACGCCGCACCTGGCCGAAGCACTTGGCTACCGCATGCCCGCGCCCACCTGCGCCGTCCCGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

98.214

0.538
  comM Glaesserella parasuis strain SC1401

53

99.206

0.526
  comM Vibrio campbellii strain DS40M4

53.333

98.214

0.524
  comM Haemophilus influenzae Rd KW20

51.4

99.206

0.51
  comM Legionella pneumophila str. Paris

50.806

98.413

0.5
  comM Legionella pneumophila strain ERS1305867

50.806

98.413

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.948

99.802

0.419

Multiple sequence alignment