Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEUKD_RS13315 Genome accession   NZ_CP169050
Coordinates   2848294..2848830 (-) Length   178 a.a.
NCBI ID   WP_012841367.1    Uniprot ID   A0AAE4M8V6
Organism   Vibrio diabolicus strain SF42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2843294..2853830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS13295 (ACEUKD_13295) - 2843613..2843945 (-) 333 WP_046873588.1 hypothetical protein -
  ACEUKD_RS13300 (ACEUKD_13300) gspM 2843938..2844588 (-) 651 WP_374093221.1 type II secretion system protein GspM -
  ACEUKD_RS13305 (ACEUKD_13305) - 2844585..2846030 (-) 1446 WP_124009111.1 MSHA biogenesis protein MshI -
  ACEUKD_RS13310 (ACEUKD_13310) csrD 2846042..2848051 (-) 2010 WP_374093220.1 RNase E specificity factor CsrD -
  ACEUKD_RS13315 (ACEUKD_13315) ssb 2848294..2848830 (-) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  ACEUKD_RS13320 (ACEUKD_13320) qstR 2849108..2849752 (+) 645 WP_047009170.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACEUKD_RS13325 (ACEUKD_13325) galU 2849910..2850782 (+) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACEUKD_RS13330 (ACEUKD_13330) uvrA 2850932..2853754 (+) 2823 WP_374093219.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19791.83 Da        Isoelectric Point: 4.9164

>NTDB_id=1049560 ACEUKD_RS13315 WP_012841367.1 2848294..2848830(-) (ssb) [Vibrio diabolicus strain SF42]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1049560 ACEUKD_RS13315 WP_012841367.1 2848294..2848830(-) (ssb) [Vibrio diabolicus strain SF42]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCGGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.601
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

43.85

100

0.461

Multiple sequence alignment