Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACEUKD_RS13320 Genome accession   NZ_CP169050
Coordinates   2849108..2849752 (+) Length   214 a.a.
NCBI ID   WP_047009170.1    Uniprot ID   A0AAE4M8A3
Organism   Vibrio diabolicus strain SF42     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844108..2854752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS13305 (ACEUKD_13305) - 2844585..2846030 (-) 1446 WP_124009111.1 MSHA biogenesis protein MshI -
  ACEUKD_RS13310 (ACEUKD_13310) csrD 2846042..2848051 (-) 2010 WP_374093220.1 RNase E specificity factor CsrD -
  ACEUKD_RS13315 (ACEUKD_13315) ssb 2848294..2848830 (-) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  ACEUKD_RS13320 (ACEUKD_13320) qstR 2849108..2849752 (+) 645 WP_047009170.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACEUKD_RS13325 (ACEUKD_13325) galU 2849910..2850782 (+) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACEUKD_RS13330 (ACEUKD_13330) uvrA 2850932..2853754 (+) 2823 WP_374093219.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24454.37 Da        Isoelectric Point: 9.5188

>NTDB_id=1049561 ACEUKD_RS13320 WP_047009170.1 2849108..2849752(+) (qstR) [Vibrio diabolicus strain SF42]
MRKSAYARKLFLISMEDNAEKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNGQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1049561 ACEUKD_RS13320 WP_047009170.1 2849108..2849752(+) (qstR) [Vibrio diabolicus strain SF42]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGGAAAAAAAGGTGGCGGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCGACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAACAAAATCC
TACTGATCGACTTCAGTGAACATAAATCACTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTTCTTTCATTTGGTCAATTAAAGGGGCTGTTCTATTCCGA
AGATACGCTAGAGCAAATTGGAGAGGGATTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAATACTCATACTGCCCCAGCCACGGTAGACCTAACCATTCGCGAGCTGCAA
GTATTGCGTTGCTTGCAAGCTGGTGCCTCGAACGGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGCGTTCAAGCAATCGCGTGGGCAGATCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.327

100

0.953
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment