Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEQ85_RS06785 Genome accession   NZ_CP168966
Coordinates   1430882..1432369 (+) Length   495 a.a.
NCBI ID   WP_373883551.1    Uniprot ID   -
Organism   Acinetobacter pittii strain LS-AP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1425882..1437369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEQ85_RS06760 (ACEQ85_06760) ribD 1426834..1427919 (-) 1086 WP_373883550.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACEQ85_RS06765 (ACEQ85_06765) nrdR 1427935..1428393 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  ACEQ85_RS06770 (ACEQ85_06770) amtB 1428517..1429914 (-) 1398 WP_017385861.1 ammonium transporter -
  ACEQ85_RS06775 (ACEQ85_06775) glnK 1429972..1430310 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ACEQ85_RS06780 (ACEQ85_06780) - 1430589..1430816 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  ACEQ85_RS06785 (ACEQ85_06785) comM 1430882..1432369 (+) 1488 WP_373883551.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEQ85_RS06790 (ACEQ85_06790) - 1432467..1433822 (+) 1356 WP_373883552.1 ankyrin repeat domain-containing protein -
  ACEQ85_RS06795 (ACEQ85_06795) - 1434130..1435563 (-) 1434 WP_069122042.1 PLP-dependent aminotransferase family protein -
  ACEQ85_RS06800 (ACEQ85_06800) - 1435675..1436451 (+) 777 WP_373883553.1 aldolase -
  ACEQ85_RS06805 (ACEQ85_06805) - 1436468..1437346 (+) 879 WP_373883554.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54462.66 Da        Isoelectric Point: 8.0827

>NTDB_id=1048982 ACEQ85_RS06785 WP_373883551.1 1430882..1432369(+) (comM) [Acinetobacter pittii strain LS-AP]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSIEPAVTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIKMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1048982 ACEQ85_RS06785 WP_373883551.1 1430882..1432369(+) (comM) [Acinetobacter pittii strain LS-AP]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACCATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCATGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTCTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAGTGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGGCCACCAGGTACAGGTAAGACTTTACTCGCGTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAAGAGACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGACAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCTCTTGAATCAAAAGAA
ATCATTATTTCACGTGCAGCTCGACAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAATCCTTGCCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCACCAGAGAGTATTAAGCGATATCAAAACCGTATATCGGGGC
CATTACTTGACCGTATCGATTTACATATTGATGTCCCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACACCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTAAAATGGCTCAGCAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.403

100

0.505
  comM Glaesserella parasuis strain SC1401

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.475

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.469

Multiple sequence alignment