Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABNR97_RS04965 Genome accession   NZ_OZ021676
Coordinates   948656..948937 (-) Length   93 a.a.
NCBI ID   WP_003696701.1    Uniprot ID   A0A0H4IVZ5
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 943656..953937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS04930 - 943922..944560 (-) 639 WP_103195245.1 7-carboxy-7-deazaguanine synthase QueE -
  ABNR97_RS04935 - 944557..944925 (-) 369 WP_003690592.1 DUF1304 domain-containing protein -
  ABNR97_RS04940 queD 945196..945630 (-) 435 WP_003690591.1 6-carboxytetrahydropterin synthase QueD -
  ABNR97_RS04945 - 945718..946233 (-) 516 WP_003687408.1 DUF1543 domain-containing protein -
  ABNR97_RS04950 queC 946261..946920 (-) 660 WP_003690590.1 7-cyano-7-deazaguanine synthase QueC -
  ABNR97_RS04955 - 947105..947310 (-) 206 Protein_972 NAD(P)H-quinone oxidoreductase -
  ABNR97_RS04960 - 947409..948635 (+) 1227 WP_003690589.1 YihY family inner membrane protein -
  ABNR97_RS04965 comA 948656..948937 (-) 282 WP_003696701.1 ATP-binding cassette domain-containing protein Regulator
  ABNR97_RS04970 - 949016..949132 (+) 117 Protein_975 IS5/IS1182 family transposase -
  ABNR97_RS04975 - 949130..949360 (-) 231 WP_225577429.1 ATP-binding cassette domain-containing protein -
  ABNR97_RS04980 - 949346..949897 (-) 552 Protein_977 cysteine peptidase family C39 domain-containing protein -
  ABNR97_RS04985 - 949999..950214 (-) 216 WP_003687400.1 hypothetical protein -
  ABNR97_RS04990 - 950228..950575 (-) 348 WP_003687399.1 hypothetical protein -
  ABNR97_RS04995 - 950760..952034 (-) 1275 WP_003698048.1 HlyD family secretion protein -
  ABNR97_RS05000 - 952095..952367 (-) 273 WP_226888059.1 hypothetical protein -
  ABNR97_RS05005 - 952442..952668 (-) 227 Protein_982 hypothetical protein -
  ABNR97_RS05010 - 952677..953831 (-) 1155 WP_010359759.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10117.78 Da        Isoelectric Point: 6.4598

>NTDB_id=1048074 ABNR97_RS04965 WP_003696701.1 948656..948937(-) (comA) [Neisseria gonorrhoeae isolate SGC-23-001]
MIREEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDEAASHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=1048074 ABNR97_RS04965 WP_003696701.1 948656..948937(-) (comA) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGATTCGCGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGTATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGAAGCGGCCAGTCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATTATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4IVZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

46.154

97.849

0.452
  comA Streptococcus mitis NCTC 12261

45.055

97.849

0.441
  comA Streptococcus pneumoniae TIGR4

45.055

97.849

0.441
  comA Streptococcus pneumoniae Rx1

45.055

97.849

0.441
  comA Streptococcus pneumoniae R6

45.055

97.849

0.441
  comA Streptococcus pneumoniae D39

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

47.126

93.548

0.441
  comA Streptococcus gordonii str. Challis substr. CH1

43.956

97.849

0.43