Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACEPM4_RS02900 | Genome accession | NZ_CP168733 |
| Coordinates | 617569..618090 (+) | Length | 173 a.a. |
| NCBI ID | WP_020831290.1 | Uniprot ID | - |
| Organism | Ralstonia pseudosolanacearum strain RUN5935 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 612569..623090
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEPM4_RS02875 (ACEPM4_02875) | recX | 612948..613427 (+) | 480 | WP_016723980.1 | recombination regulator RecX | - |
| ACEPM4_RS02880 (ACEPM4_02880) | - | 613702..614328 (+) | 627 | WP_354536637.1 | DUF2889 domain-containing protein | - |
| ACEPM4_RS02885 (ACEPM4_02885) | sucC | 614395..615561 (+) | 1167 | WP_011000513.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACEPM4_RS02890 (ACEPM4_02890) | sucD | 615646..616527 (+) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| ACEPM4_RS02895 (ACEPM4_02895) | - | 616677..617375 (+) | 699 | WP_028860212.1 | TerC family protein | - |
| ACEPM4_RS02900 (ACEPM4_02900) | pilA | 617569..618090 (+) | 522 | WP_020831290.1 | pilin | Machinery gene |
| ACEPM4_RS02905 (ACEPM4_02905) | pilA | 618357..618866 (+) | 510 | WP_016723977.1 | pilin | Machinery gene |
| ACEPM4_RS02910 (ACEPM4_02910) | - | 618949..620682 (+) | 1734 | WP_064477534.1 | PglL family O-oligosaccharyltransferase | - |
| ACEPM4_RS02915 (ACEPM4_02915) | moaC | 620911..621387 (-) | 477 | WP_011000519.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17811.51 Da Isoelectric Point: 9.7091
>NTDB_id=1045382 ACEPM4_RS02900 WP_020831290.1 617569..618090(+) (pilA) [Ralstonia pseudosolanacearum strain RUN5935]
MASKYSRNRPRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
MASKYSRNRPRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
Nucleotide
Download Length: 522 bp
>NTDB_id=1045382 ACEPM4_RS02900 WP_020831290.1 617569..618090(+) (pilA) [Ralstonia pseudosolanacearum strain RUN5935]
ATGGCATCGAAGTACAGCAGGAACCGGCCGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATTGGGATATTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATATTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
ATGGCATCGAAGTACAGCAGGAACCGGCCGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATTGGGATATTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATATTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.705 |
100 |
0.526 |
| pilA2 | Legionella pneumophila str. Paris |
44.848 |
95.376 |
0.428 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.242 |
95.376 |
0.422 |
| comP | Acinetobacter baylyi ADP1 |
39.773 |
100 |
0.405 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.938 |
100 |
0.399 |