Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QPK16_RS30235 Genome accession   NZ_OX638610
Coordinates   6527975..6528472 (+) Length   165 a.a.
NCBI ID   WP_033982593.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 3541 isolate 3541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6522975..6533472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK16_RS30215 (JCHGIK_31450) - 6524509..6524781 (+) 273 WP_003150493.1 hypothetical protein -
  QPK16_RS30220 (JCHGIK_31455) - 6524883..6525851 (+) 969 WP_033982598.1 DUF932 domain-containing protein -
  QPK16_RS30225 (JCHGIK_31460) - 6525926..6526930 (+) 1005 WP_033982596.1 lambda-exonuclease family protein -
  QPK16_RS30230 (JCHGIK_31465) - 6527020..6527922 (+) 903 WP_033982594.1 hypothetical protein -
  QPK16_RS30235 (JCHGIK_31470) radC 6527975..6528472 (+) 498 WP_033982593.1 DNA repair protein RadC Machinery gene
  QPK16_RS30240 (JCHGIK_31475) - 6528491..6528679 (+) 189 WP_033982590.1 hypothetical protein -
  QPK16_RS30245 (JCHGIK_31480) - 6528718..6529047 (+) 330 WP_033982589.1 hypothetical protein -
  QPK16_RS30250 (JCHGIK_31485) - 6529050..6529397 (-) 348 WP_033982605.1 helix-turn-helix transcriptional regulator -
  QPK16_RS30255 - 6529747..6530169 (+) 423 WP_125728822.1 hypothetical protein -
  QPK16_RS30260 (JCHGIK_31495) - 6530285..6530947 (+) 663 WP_033982585.1 hypothetical protein -
  QPK16_RS30265 (JCHGIK_31500) - 6531019..6531720 (-) 702 WP_033982583.1 inovirus Gp2 family protein -
  QPK16_RS30270 (JCHGIK_31505) - 6532393..6533436 (+) 1044 WP_033982581.1 WYL domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18041.80 Da        Isoelectric Point: 7.2510

>NTDB_id=1045367 QPK16_RS30235 WP_033982593.1 6527975..6528472(+) (radC) [Pseudomonas aeruginosa strain 3541 isolate 3541]
MKSPTLKAGKIAGSYIIDSPVTEADILQLALQLAARRLARGKPLTDPLQVAEHLQVLLQDHEHEVFALLLLDGKHRVIGF
RELFRGTLDGASVYPREVLKTVLEHNAAGVILVHNHPSGDPTPSQADHRLTNTLKTALELVGTRTLDHIVVGREGFISLA
QQGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1045367 QPK16_RS30235 WP_033982593.1 6527975..6528472(+) (radC) [Pseudomonas aeruginosa strain 3541 isolate 3541]
ATGAAATCGCCCACGCTCAAGGCCGGCAAAATTGCCGGCAGCTACATCATCGACAGCCCCGTCACCGAAGCTGACATCCT
ACAACTGGCGTTGCAATTGGCCGCTCGGCGCCTGGCCAGAGGGAAACCGCTGACCGATCCGCTGCAGGTTGCCGAGCATC
TACAAGTACTGCTGCAGGACCATGAACACGAGGTATTCGCCCTGTTACTGCTCGACGGCAAGCATAGGGTCATCGGTTTC
CGAGAGCTGTTCAGAGGAACACTGGACGGAGCCAGCGTCTATCCCCGCGAAGTACTCAAGACCGTGCTCGAACACAACGC
GGCGGGCGTGATCCTGGTACACAACCATCCTTCCGGCGATCCAACCCCCAGCCAGGCAGACCATCGCCTGACTAACACGC
TAAAGACTGCACTGGAACTGGTCGGCACCCGCACGCTGGATCACATTGTGGTCGGCCGCGAAGGCTTCATCTCCCTGGCC
CAACAGGGTTACCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

39.024

99.394

0.388

Multiple sequence alignment