Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACEPMY_RS14160 | Genome accession | NZ_CP168729 |
| Coordinates | 2980579..2981082 (-) | Length | 167 a.a. |
| NCBI ID | WP_071623446.1 | Uniprot ID | - |
| Organism | Ralstonia pseudosolanacearum strain RUN6340 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2975579..2986082
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEPMY_RS14145 (ACEPMY_14145) | - | 2976151..2977839 (-) | 1689 | WP_028852634.1 | M48 family metallopeptidase | - |
| ACEPMY_RS14150 (ACEPMY_14150) | moaC | 2977933..2978409 (+) | 477 | WP_197345156.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| ACEPMY_RS14155 (ACEPMY_14155) | - | 2978766..2980505 (-) | 1740 | WP_197345155.1 | PglL family O-oligosaccharyltransferase | - |
| ACEPMY_RS14160 (ACEPMY_14160) | pilA | 2980579..2981082 (-) | 504 | WP_071623446.1 | pilin | Machinery gene |
| ACEPMY_RS14165 (ACEPMY_14165) | pilA | 2981354..2981875 (-) | 522 | WP_071623445.1 | pilin | Machinery gene |
| ACEPMY_RS14170 (ACEPMY_14170) | - | 2982069..2982767 (-) | 699 | WP_197345154.1 | TerC family protein | - |
| ACEPMY_RS14175 (ACEPMY_14175) | sucD | 2982917..2983798 (-) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| ACEPMY_RS14180 (ACEPMY_14180) | sucC | 2983883..2985049 (-) | 1167 | WP_011000513.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACEPMY_RS14185 (ACEPMY_14185) | - | 2985116..2985742 (-) | 627 | WP_197345153.1 | DUF2889 domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 17274.91 Da Isoelectric Point: 10.1051
>NTDB_id=1045346 ACEPMY_RS14160 WP_071623446.1 2980579..2981082(-) (pilA) [Ralstonia pseudosolanacearum strain RUN6340]
MKSMRRLNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTIRARVTEGLSLAAQAKSLVAENAANAQSDLSAGSSTFV
ATKNVSNLLIDKTSGEIQVTYNANAGNGWLVVVPSSAGAALKAASTPGSAIQWTCFAQGKATPASVTGPAAYTSPTLLAK
YAPAECR
MKSMRRLNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTIRARVTEGLSLAAQAKSLVAENAANAQSDLSAGSSTFV
ATKNVSNLLIDKTSGEIQVTYNANAGNGWLVVVPSSAGAALKAASTPGSAIQWTCFAQGKATPASVTGPAAYTSPTLLAK
YAPAECR
Nucleotide
Download Length: 504 bp
>NTDB_id=1045346 ACEPMY_RS14160 WP_071623446.1 2980579..2981082(-) (pilA) [Ralstonia pseudosolanacearum strain RUN6340]
ATGAAGTCGATGCGTCGTCTGAACAAGCGTGTCCAGAAGGGTTTCACGCTGATCGAACTGATGATCGTGGTCGCGATCGT
CGGTATTCTGGCCGCTATCGCTATTCCGGCCTACCAGGACTACACGATCCGCGCTCGCGTGACGGAAGGCCTGTCGCTGG
CTGCACAAGCCAAGTCGCTGGTGGCTGAAAACGCTGCAAACGCTCAAAGCGATCTGTCGGCCGGTTCGTCGACGTTCGTG
GCTACCAAGAACGTTTCGAACCTGCTGATCGATAAGACTTCGGGTGAAATCCAGGTGACCTACAATGCCAATGCCGGCAA
TGGTTGGCTGGTGGTGGTTCCGTCGTCTGCCGGTGCAGCACTTAAGGCCGCCTCGACTCCGGGTTCCGCTATCCAATGGA
CGTGCTTCGCGCAAGGCAAGGCGACGCCGGCAAGCGTGACTGGTCCCGCAGCGTACACGAGCCCGACTCTTCTGGCCAAG
TACGCTCCGGCAGAGTGCCGTTAA
ATGAAGTCGATGCGTCGTCTGAACAAGCGTGTCCAGAAGGGTTTCACGCTGATCGAACTGATGATCGTGGTCGCGATCGT
CGGTATTCTGGCCGCTATCGCTATTCCGGCCTACCAGGACTACACGATCCGCGCTCGCGTGACGGAAGGCCTGTCGCTGG
CTGCACAAGCCAAGTCGCTGGTGGCTGAAAACGCTGCAAACGCTCAAAGCGATCTGTCGGCCGGTTCGTCGACGTTCGTG
GCTACCAAGAACGTTTCGAACCTGCTGATCGATAAGACTTCGGGTGAAATCCAGGTGACCTACAATGCCAATGCCGGCAA
TGGTTGGCTGGTGGTGGTTCCGTCGTCTGCCGGTGCAGCACTTAAGGCCGCCTCGACTCCGGGTTCCGCTATCCAATGGA
CGTGCTTCGCGCAAGGCAAGGCGACGCCGGCAAGCGTGACTGGTCCCGCAGCGTACACGAGCCCGACTCTTCTGGCCAAG
TACGCTCCGGCAGAGTGCCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
70.588 |
100 |
0.719 |
| pilA2 | Legionella pneumophila str. Paris |
49.375 |
95.808 |
0.473 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.75 |
95.808 |
0.467 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.938 |
100 |
0.413 |
| comP | Acinetobacter baylyi ADP1 |
39.766 |
100 |
0.407 |