Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACEPM5_RS03105 | Genome accession | NZ_CP168725 |
| Coordinates | 653666..654187 (+) | Length | 173 a.a. |
| NCBI ID | WP_011000516.1 | Uniprot ID | Q8Y1Y0 |
| Organism | Ralstonia pseudosolanacearum strain RUN6534 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 648666..659187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEPM5_RS03080 (ACEPM5_03080) | recX | 649045..649524 (+) | 480 | WP_011000511.1 | recombination regulator RecX | - |
| ACEPM5_RS03085 (ACEPM5_03085) | - | 649799..650425 (+) | 627 | WP_011000512.1 | DUF2889 domain-containing protein | - |
| ACEPM5_RS03090 (ACEPM5_03090) | sucC | 650492..651658 (+) | 1167 | WP_011000513.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACEPM5_RS03095 (ACEPM5_03095) | sucD | 651743..652624 (+) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| ACEPM5_RS03100 (ACEPM5_03100) | - | 652774..653472 (+) | 699 | WP_011000515.1 | TerC family protein | - |
| ACEPM5_RS03105 (ACEPM5_03105) | pilA | 653666..654187 (+) | 522 | WP_011000516.1 | pilin | Machinery gene |
| ACEPM5_RS03110 (ACEPM5_03110) | pilA | 654454..654960 (+) | 507 | WP_011000517.1 | pilin | Machinery gene |
| ACEPM5_RS03115 (ACEPM5_03115) | - | 655042..656775 (+) | 1734 | WP_043876542.1 | PglL family O-oligosaccharyltransferase | - |
| ACEPM5_RS03120 (ACEPM5_03120) | moaC | 657004..657480 (-) | 477 | WP_011000519.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17844.54 Da Isoelectric Point: 10.0311
>NTDB_id=1045298 ACEPM5_RS03105 WP_011000516.1 653666..654187(+) (pilA) [Ralstonia pseudosolanacearum strain RUN6534]
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
Nucleotide
Download Length: 522 bp
>NTDB_id=1045298 ACEPM5_RS03105 WP_011000516.1 653666..654187(+) (pilA) [Ralstonia pseudosolanacearum strain RUN6534]
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATTGGGATATTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATACTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATTGGGATATTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATACTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.705 |
100 |
0.526 |
| pilA2 | Legionella pneumophila str. Paris |
44.848 |
95.376 |
0.428 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.242 |
95.376 |
0.422 |
| comP | Acinetobacter baylyi ADP1 |
39.773 |
100 |
0.405 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.938 |
100 |
0.399 |