Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEO96_RS01705 Genome accession   NZ_CP168657
Coordinates   340628..341161 (+) Length   177 a.a.
NCBI ID   WP_013857892.1    Uniprot ID   A0AAW8GW50
Organism   Vibrio anguillarum strain VA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 335628..346161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS01690 (ACEO96_01690) uvrA 335717..338539 (-) 2823 WP_373433353.1 excinuclease ABC subunit UvrA -
  ACEO96_RS01695 (ACEO96_01695) galU 338708..339577 (-) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACEO96_RS01700 (ACEO96_01700) qstR 339695..340342 (-) 648 WP_047688160.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACEO96_RS01705 (ACEO96_01705) ssb 340628..341161 (+) 534 WP_013857892.1 single-stranded DNA-binding protein Machinery gene
  ACEO96_RS01710 (ACEO96_01710) csrD 341291..343279 (+) 1989 WP_373433180.1 RNase E specificity factor CsrD -
  ACEO96_RS01715 (ACEO96_01715) - 343292..344734 (+) 1443 WP_088731575.1 MSHA biogenesis protein MshI -
  ACEO96_RS01720 (ACEO96_01720) gspM 344731..345375 (+) 645 WP_017047102.1 type II secretion system protein GspM -
  ACEO96_RS01725 (ACEO96_01725) - 345365..345691 (+) 327 WP_017050664.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19459.61 Da        Isoelectric Point: 5.2257

>NTDB_id=1044806 ACEO96_RS01705 WP_013857892.1 340628..341161(+) (ssb) [Vibrio anguillarum strain VA1]
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQQSAPQQA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1044806 ACEO96_RS01705 WP_013857892.1 340628..341161(+) (ssb) [Vibrio anguillarum strain VA1]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGTGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTGGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGCGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGTTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGCAGTCAGCTCCTCAACAGGCT
CAACCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

84.916

100

0.859
  ssb Glaesserella parasuis strain SC1401

54.974

100

0.593
  ssb Neisseria meningitidis MC58

43.889

100

0.446
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.446

Multiple sequence alignment