Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACEO96_RS01700 Genome accession   NZ_CP168657
Coordinates   339695..340342 (-) Length   215 a.a.
NCBI ID   WP_047688160.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VA1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 334695..345342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS01690 (ACEO96_01690) uvrA 335717..338539 (-) 2823 WP_373433353.1 excinuclease ABC subunit UvrA -
  ACEO96_RS01695 (ACEO96_01695) galU 338708..339577 (-) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACEO96_RS01700 (ACEO96_01700) qstR 339695..340342 (-) 648 WP_047688160.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACEO96_RS01705 (ACEO96_01705) ssb 340628..341161 (+) 534 WP_013857892.1 single-stranded DNA-binding protein Machinery gene
  ACEO96_RS01710 (ACEO96_01710) csrD 341291..343279 (+) 1989 WP_373433180.1 RNase E specificity factor CsrD -
  ACEO96_RS01715 (ACEO96_01715) - 343292..344734 (+) 1443 WP_088731575.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25063.85 Da        Isoelectric Point: 8.1663

>NTDB_id=1044805 ACEO96_RS01700 WP_047688160.1 339695..340342(-) (qstR) [Vibrio anguillarum strain VA1]
MRKTNYTRTIYFLCLDKEQEHPYIDHLTDRLGLPIPKIEPEILRQTYCPDKHKILMIDHADYALLQQRLGNCPLSSQHHE
TILINVLQRLTTNDLLTFGHLKGLFYKNDTLDKIAFGLGEIINGQNWLPRHAVSQLLHYYRYAFESHTAQVITDLTAREI
QILRCLQTGASNNQMSEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1044805 ACEO96_RS01700 WP_047688160.1 339695..340342(-) (qstR) [Vibrio anguillarum strain VA1]
ATGAGAAAAACAAACTATACCCGCACCATTTACTTTCTTTGCTTAGATAAAGAGCAAGAGCACCCTTATATTGACCATTT
AACCGATCGGCTTGGACTGCCCATTCCAAAAATTGAGCCTGAAATCCTGCGCCAAACGTATTGTCCAGATAAACACAAAA
TATTGATGATTGACCATGCCGATTATGCGCTACTGCAGCAACGCTTGGGAAACTGCCCATTAAGCAGTCAGCATCATGAA
ACGATCCTTATCAATGTGTTGCAAAGATTAACCACGAATGACTTATTAACCTTTGGCCATTTAAAGGGGCTATTTTATAA
AAATGACACCCTAGATAAAATTGCATTTGGGCTTGGTGAAATCATTAACGGACAAAATTGGCTACCCAGACACGCTGTAA
GCCAGTTACTGCACTACTATCGCTACGCGTTTGAATCCCATACTGCTCAAGTGATTACAGACTTAACCGCCCGCGAAATA
CAGATCCTCCGCTGCTTACAAACTGGCGCATCGAATAACCAAATGTCGGAAGATTTATTCATCAGTGAATTCACGGTCAA
ATCACATCTCTACCAAATATTCAAAAAGCTATCGGTCAAAAATAGGGTCCAAGCGATTGCGTGGGCCAATCAAAATATTC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

66.355

99.535

0.66
  qstR Vibrio campbellii strain DS40M4

52.558

100

0.526
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.521

Multiple sequence alignment