Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEN89_RS16930 Genome accession   NZ_CP168602
Coordinates   3591272..3592792 (+) Length   506 a.a.
NCBI ID   WP_413676030.1    Uniprot ID   -
Organism   Pantoea dispersa strain CT11-120     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3586272..3597792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN89_RS16910 (ACEN89_16915) - 3587847..3588776 (-) 930 WP_021507916.1 branched-chain amino acid transaminase -
  ACEN89_RS16915 (ACEN89_16920) ilvM 3588795..3589052 (-) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  ACEN89_RS16920 (ACEN89_16925) ilvG 3589049..3590695 (-) 1647 WP_222951490.1 acetolactate synthase 2 catalytic subunit -
  ACEN89_RS16925 (ACEN89_16930) ilvL 3590845..3590943 (-) 99 WP_071813600.1 ilv operon leader peptide -
  ACEN89_RS16930 (ACEN89_16935) comM 3591272..3592792 (+) 1521 WP_413676030.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEN89_RS16935 (ACEN89_16940) - 3592821..3593159 (-) 339 WP_021507919.1 DUF413 domain-containing protein -
  ACEN89_RS16940 (ACEN89_16945) hdfR 3593281..3594102 (+) 822 WP_031279770.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55001.19 Da        Isoelectric Point: 7.6255

>NTDB_id=1044595 ACEN89_RS16930 WP_413676030.1 3591272..3592792(+) (comM) [Pantoea dispersa strain CT11-120]
MSLSKVLTRAALGVQAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPGDKLAHYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNQTALTVAHYQPETVPHEQQDLSDIIGQQQGRRALEITAAGGHNLLLLGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGTLHHQWRKRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERKALDALREPIES
GEIAISRSRAKVTFPARFQLIGAMNPSPTGHYQGNHNRCTPQQVLRYLSRLSGPFLDRFDLSLEIPLLPGGSLSQKQQHS
ETSAQVRARVLAARAIQMARAGKVNSQLSNPEIARDCVLQQQDAEWLEEILNALGLSVRAWQRILKVARTIADLADERQI
TRQHLQEAVGYRSIDRLLIYLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1044595 ACEN89_RS16930 WP_413676030.1 3591272..3592792(+) (comM) [Pantoea dispersa strain CT11-120]
ATGTCTTTATCGAAAGTATTAACACGCGCGGCGCTCGGAGTGCAGGCTCCACTGGTGACGATTGAAGTGCATATCAGCAA
TGGTCTGCCAGCATTGACGCTGGTAGGTCTGCCGGAAACCACCGTCAAAGAAGCCCGCGAACGCGTGCGCAGCGCCATTA
TCAATAGCGGTTTCACCTTTCCGGCGAAGCGCGTCACCATTAATCTCGCGCCAGCAGATTTACCTAAAGAGGGTGGGCGC
TACGACCTGCCGATCGCTATCGCCATTCTCGCGGCCTCAGAGCAGCTGCCAGGCGATAAGCTGGCCCATTATGAGTTCCT
GGGTGAGTTGGCGCTAAACGGCGCGCTGTGTGGCGTTCAGGCCGCGATTCCTGCTGCCATGGCGGCACTGCAGGCCGGGC
GTCAGATGGTCTTAGCGGAGCAGAATCAACAGGATGTCGGCCTGATACAACAGGGTGAAACGCTGGTGGGCAAGCATCTG
GTGGAGATCTGCGCTTTCCTGCATAACCAGACGGCGCTGACGGTCGCCCACTACCAGCCTGAAACGGTGCCGCACGAGCA
GCAGGACCTGAGCGATATTATTGGCCAGCAGCAGGGACGGCGCGCGCTGGAAATTACCGCCGCCGGTGGCCATAACCTGT
TGCTGCTGGGCCCGCCCGGCACCGGTAAGACCATGCTGGCAACCCGATTGCCCGGCATTATGCCTCCGCTGGACGACCAG
GAAGCGCTGGAGTGCGCCGCAATTGCCAGCCTGGTCAGCAGCGGTACGCTACATCATCAGTGGCGTAAACGGCCGTTCAG
AGCGCCTCATCACAGCGCATCGTTGTATGCGCTGGTCGGCGGAGGATCACTACCGCGGCCGGGCGAAATTTCGCTGGCGC
ACAACGGGGTGCTGTTTCTTGATGAACTGCCCGAGTTTGAGCGCAAAGCACTGGATGCGTTACGCGAGCCGATTGAGTCC
GGAGAAATCGCCATTTCCCGTTCCCGCGCCAAAGTCACTTTCCCTGCACGCTTTCAGCTGATTGGTGCAATGAATCCCAG
CCCGACGGGCCATTATCAGGGGAATCATAATCGCTGCACGCCGCAGCAGGTGCTGCGCTATCTCAGCCGGCTGTCTGGCC
CGTTTCTGGATCGCTTCGATCTGTCGCTGGAGATTCCGCTGCTACCGGGCGGCTCGCTCAGCCAGAAGCAGCAGCACAGC
GAAACCAGCGCGCAGGTGCGCGCCCGCGTACTGGCCGCCCGGGCGATACAGATGGCACGCGCGGGCAAAGTGAATTCGCA
GTTGTCGAATCCGGAGATCGCCCGTGATTGTGTGTTACAGCAGCAGGACGCGGAATGGCTGGAGGAGATCCTGAATGCAC
TGGGATTATCGGTGCGTGCATGGCAGCGCATCTTAAAGGTGGCGAGAACCATCGCAGATTTAGCGGATGAACGGCAGATT
ACGCGTCAGCATCTGCAGGAGGCGGTGGGATATCGCAGTATCGATCGTTTACTGATTTACCTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.028

99.407

0.617
  comM Glaesserella parasuis strain SC1401

61.829

99.407

0.615
  comM Vibrio cholerae strain A1552

61.155

99.209

0.607
  comM Vibrio campbellii strain DS40M4

60.359

99.209

0.599
  comM Legionella pneumophila str. Paris

47.887

98.221

0.47
  comM Legionella pneumophila strain ERS1305867

47.887

98.221

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

100

0.431

Multiple sequence alignment