Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEN89_RS00585 Genome accession   NZ_CP168602
Coordinates   133905..134447 (+) Length   180 a.a.
NCBI ID   WP_021507842.1    Uniprot ID   -
Organism   Pantoea dispersa strain CT11-120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 128905..139447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN89_RS00570 (ACEN89_00570) - 129158..129514 (+) 357 WP_021507845.1 MmcQ/YjbR family DNA-binding protein -
  ACEN89_RS00575 (ACEN89_00575) - 129515..130579 (-) 1065 WP_058757558.1 NAD(P)-dependent alcohol dehydrogenase -
  ACEN89_RS00580 (ACEN89_00580) uvrA 130855..133683 (-) 2829 WP_413676135.1 excinuclease ABC subunit UvrA -
  ACEN89_RS00585 (ACEN89_00585) ssb 133905..134447 (+) 543 WP_021507842.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACEN89_RS00590 (ACEN89_00590) - 134499..134963 (-) 465 WP_058774932.1 RES family NAD+ phosphorylase -
  ACEN89_RS00595 (ACEN89_00595) - 134960..135403 (-) 444 WP_141496166.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  ACEN89_RS00600 (ACEN89_00600) - 135477..136004 (-) 528 WP_413676136.1 isochorismatase family protein -
  ACEN89_RS00605 (ACEN89_00605) - 136131..136961 (+) 831 WP_058757554.1 AraC family transcriptional regulator -
  ACEN89_RS00610 (ACEN89_00610) - 137034..137987 (+) 954 WP_104093916.1 DMT family transporter -
  ACEN89_RS00615 (ACEN89_00615) - 138896..139291 (-) 396 WP_031279757.1 transposase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19303.24 Da        Isoelectric Point: 5.2358

>NTDB_id=1044579 ACEN89_RS00585 WP_021507842.1 133905..134447(+) (ssb) [Pantoea dispersa strain CT11-120]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDKYTTEVVVNVGGTMQMLGGRQQGGNGGGAPMGGQGGGNNNGWGQPQQPQGGGNQFSGGAQQRPQ
QQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1044579 ACEN89_RS00585 WP_021507842.1 133905..134447(+) (ssb) [Pantoea dispersa strain CT11-120]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTAGCCAACATTACGCTGGCCACGTCAGAGAGCTGGCGCGACAAGCAAACCGGTGAAAACAAAGAGATCACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCTGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCGCAGGTCTACATT
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGACCAGAGCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGCAACGGCGGTGGCGCACCGATGGGCGGCCAGGGCGGCGGCA
ACAATAACGGCTGGGGCCAGCCGCAGCAGCCACAGGGTGGGGGCAACCAGTTCAGCGGCGGCGCGCAGCAGCGTCCACAG
CAGCAGAGCGCACCGGCGAACAACGAACCACCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.118

100

0.756
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.6
  ssb Neisseria meningitidis MC58

45

100

0.45
  ssb Neisseria gonorrhoeae MS11

45

100

0.45
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.372

Multiple sequence alignment