Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEOAC_RS00500 Genome accession   NZ_CP168558
Coordinates   90702..92237 (+) Length   511 a.a.
NCBI ID   WP_413445273.1    Uniprot ID   -
Organism   Herbaspirillum frisingense strain CT11-119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 85702..97237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEOAC_RS00480 (ACEOAC_00480) - 87283..88815 (-) 1533 WP_241813801.1 ammonium transporter -
  ACEOAC_RS00485 (ACEOAC_00485) - 88831..89169 (-) 339 WP_006713297.1 P-II family nitrogen regulator -
  ACEOAC_RS00490 (ACEOAC_00490) - 89182..89964 (-) 783 WP_077234967.1 TorF family putative porin -
  ACEOAC_RS00495 (ACEOAC_00495) - 90383..90628 (+) 246 WP_006713294.1 accessory factor UbiK family protein -
  ACEOAC_RS00500 (ACEOAC_00500) comM 90702..92237 (+) 1536 WP_413445273.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEOAC_RS00505 (ACEOAC_00505) - 92381..93013 (+) 633 WP_241813906.1 LysE family translocator -
  ACEOAC_RS00510 (ACEOAC_00510) - 93022..95028 (-) 2007 WP_413628633.1 OPT family oligopeptide transporter -
  ACEOAC_RS00515 (ACEOAC_00515) - 95170..95697 (+) 528 WP_241813904.1 hypothetical protein -
  ACEOAC_RS00520 (ACEOAC_00520) - 95875..96219 (+) 345 WP_006713251.1 DUF1840 domain-containing protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 54586.37 Da        Isoelectric Point: 9.1798

>NTDB_id=1044531 ACEOAC_RS00500 WP_413445273.1 90702..92237(+) (comM) [Herbaspirillum frisingense strain CT11-119]
MSLAVLRSRALAGMAAPPVTVEVHLANGLPAFTIVGLPEAEVKEAKDRVRAALQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPSDHLDDYEYAGELSLSGQLRPIRGALAMTCAMQHPGEPDRRQRAFILPVGNADEAALVQQATI
LPAASLLDVCAHFSARDERGRLQRHRGATGAGANGQRPAYPDFSDIKGQLRARRAMEVAAAGGHSILLVGPPGAGKSMLA
TRFAGILPPMSEAQALESAAVQSLAGHFDSARWKQRPYRAPHHTASAVALVGGGSTPRPGEISLAHHGVLFLDEIAEYPR
SVLDVLRQPMESGHIVISRAARQAEFPARFQLVAAMNPCPCGFYADPSGRCRCTPELVKRYQQRLSGPLLDRIDMQLQVA
ALTPTELGAPGQGESSDAIAARVAAAAERQWQRQGMPNSQLSGSAVDRYCDPGAEGAQLLQQAMVRLQWSARAYHRVLRL
ARTIADLAGAPAIQAAHIAEAIQYRRALNTG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1044531 ACEOAC_RS00500 WP_413445273.1 90702..92237(+) (comM) [Herbaspirillum frisingense strain CT11-119]
ATGAGCCTGGCGGTCTTGCGCAGCCGCGCGCTGGCCGGCATGGCCGCCCCACCGGTGACGGTGGAGGTGCATCTGGCCAA
TGGCCTGCCGGCCTTCACCATCGTCGGTCTTCCCGAAGCCGAAGTGAAGGAAGCCAAGGACCGCGTCCGGGCGGCGCTGC
AGAATGCGCGGTTCGAATTCCCGGCACGACGCATCACGGTCAACCTGGCGCCTGCCGACCTTCCCAAGGAATCCGGGCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCTCCGGGCAGATTCCCTCTGACCATCTGGATGACTATGAATACGC
AGGTGAACTGTCGCTATCGGGCCAATTGCGGCCGATCCGCGGTGCACTGGCAATGACCTGCGCCATGCAACACCCCGGGG
AGCCGGACCGGCGGCAACGCGCCTTCATCCTGCCGGTCGGTAATGCCGACGAGGCGGCGCTGGTGCAGCAGGCGACCATC
CTTCCGGCCGCGTCGCTGCTGGATGTATGCGCGCATTTCAGCGCCCGCGACGAGAGAGGCCGCCTGCAGCGCCATCGAGG
CGCCACCGGGGCAGGAGCGAATGGTCAGCGCCCGGCCTACCCCGATTTCAGCGATATCAAGGGACAGCTCCGGGCCAGGC
GGGCGATGGAGGTGGCGGCAGCCGGGGGCCACAGCATCCTGCTGGTGGGGCCGCCCGGGGCGGGCAAATCGATGCTGGCC
ACGCGTTTTGCCGGCATCCTGCCGCCCATGAGCGAGGCACAGGCGCTGGAGTCGGCCGCCGTCCAATCGCTGGCCGGCCA
CTTCGACAGCGCCCGCTGGAAACAGCGCCCCTATCGCGCGCCGCATCACACGGCCTCCGCCGTGGCGCTGGTCGGTGGCG
GTAGCACACCCCGCCCGGGCGAGATCTCGCTGGCCCATCACGGGGTGCTGTTCCTGGACGAGATCGCGGAATACCCGCGC
AGCGTGCTCGACGTGCTGCGCCAGCCGATGGAGTCGGGCCACATCGTCATTTCACGGGCGGCACGCCAGGCGGAGTTTCC
CGCGCGCTTCCAGTTGGTCGCGGCGATGAACCCCTGCCCATGTGGCTTCTACGCCGACCCGAGCGGACGTTGTCGCTGCA
CGCCGGAGCTGGTCAAGCGCTACCAGCAACGCCTGTCCGGCCCCCTGCTGGATCGCATCGACATGCAATTGCAGGTGGCT
GCGCTGACGCCCACAGAGCTGGGCGCGCCTGGGCAGGGGGAATCCAGTGACGCCATCGCCGCACGGGTGGCGGCCGCCGC
CGAGCGGCAATGGCAACGCCAGGGCATGCCCAACAGCCAATTGAGCGGCAGCGCGGTGGACCGGTATTGCGACCCCGGCG
CCGAGGGCGCGCAACTGCTGCAGCAGGCCATGGTCCGCCTGCAGTGGTCGGCCCGGGCCTATCACCGCGTGCTGCGGCTG
GCGCGCACCATCGCCGATCTGGCCGGCGCGCCTGCCATCCAGGCGGCGCATATTGCCGAAGCGATCCAGTACCGGCGCGC
CCTCAATACGGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.888

99.217

0.505
  comM Vibrio campbellii strain DS40M4

50.493

99.217

0.501
  comM Glaesserella parasuis strain SC1401

49.902

99.609

0.497
  comM Legionella pneumophila str. Paris

49.219

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.219

100

0.493
  comM Haemophilus influenzae Rd KW20

49.412

99.804

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.93

98.434

0.442

Multiple sequence alignment