Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEN9J_RS19515 Genome accession   NZ_CP168540
Coordinates   4222181..4223719 (+) Length   512 a.a.
NCBI ID   WP_413761819.1    Uniprot ID   -
Organism   Variovorax sp. Varisp41 strain CT11-41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4217181..4228719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN9J_RS19495 (ACEN9J_19495) - 4218041..4218970 (-) 930 WP_413761818.1 SMP-30/gluconolactonase/LRE family protein -
  ACEN9J_RS19500 (ACEN9J_19500) - 4219234..4220655 (-) 1422 WP_057597342.1 ammonium transporter -
  ACEN9J_RS19505 (ACEN9J_19505) glnK 4220685..4221023 (-) 339 WP_057597341.1 P-II family nitrogen regulator -
  ACEN9J_RS19510 (ACEN9J_19510) - 4221088..4221966 (-) 879 WP_082321720.1 TorF family putative porin -
  ACEN9J_RS19515 (ACEN9J_19515) comM 4222181..4223719 (+) 1539 WP_413761819.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEN9J_RS19520 (ACEN9J_19520) - 4224258..4226477 (+) 2220 WP_413761820.1 GNAT family N-acetyltransferase -
  ACEN9J_RS19525 (ACEN9J_19525) - 4226416..4226916 (+) 501 WP_413761821.1 hypothetical protein -
  ACEN9J_RS19530 (ACEN9J_19530) - 4227456..4228241 (+) 786 WP_413761822.1 AbiJ-NTD4 domain-containing protein -
  ACEN9J_RS19535 (ACEN9J_19535) - 4228286..4228683 (-) 398 Protein_3872 transposase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54138.90 Da        Isoelectric Point: 8.2328

>NTDB_id=1044519 ACEN9J_RS19515 WP_413761819.1 4222181..4223719(+) (comM) [Variovorax sp. Varisp41 strain CT11-41]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPMALGILAASGQIEGARLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPATSADEAALVPGGEVYGA
RHLLDVVRRFLPADAQAGLEADDEGWSRAHASAQADAPAYADMADVKGHAGAKRALEIAAAGGHSLLMMGEPGSGKSMLG
QRFAGLLPPMRIDEALESAAIASLGGRFSTERWMHRPTASPHHTSSAVALVGGGSPPRPGEISMAHHGVLFLDEFPEFSR
AALEALREPLETGTITIARAARRAEFPARFQLVAAMNPCPCGFLGAPTKTCRCTPDQVARYQRKLSGPLLDRIDLHIEVP
AISAPQLLDAPAGETTAAIRARVVAARERAIERQGRPNQALQGADIDRHAALGDEARRFMHTAAARLGWSARSTHRALKV
ARTIADLAGAPVIETAHVAEAVQYRRALQKSL

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=1044519 ACEN9J_RS19515 WP_413761819.1 4222181..4223719(+) (comM) [Variovorax sp. Varisp41 strain CT11-41]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCGAGCTTCACGCTGGTCGGGCTGGCCGAGACCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCGGCCATCC
AGAACGCCGGGCTGGAGTTCCCGCACAACAAGCGCATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGATTCGGGC
CGCTTCGACCTGCCGATGGCGCTGGGCATCCTCGCGGCCAGCGGCCAGATCGAGGGCGCGCGGCTCGCGGGGCACGAGTT
CGCGGGCGAGCTCTCGCTGTCGGGCGAACTGCGGCCGGTGCGCGGCGCGCTCGCGATGGCGCTCGCGCTGCACACGCGCG
GCATCGCCACCCGGCTGGTGCTGCCCGCGACCAGCGCCGACGAGGCCGCGCTGGTGCCCGGCGGCGAGGTCTACGGCGCC
AGGCACCTGCTCGACGTGGTGCGGCGCTTCCTGCCGGCCGATGCGCAGGCGGGCCTGGAGGCGGACGACGAGGGCTGGTC
GCGCGCCCATGCGTCCGCGCAAGCCGATGCCCCCGCCTATGCCGACATGGCCGACGTGAAGGGCCATGCCGGCGCCAAGC
GCGCGCTCGAGATCGCCGCGGCCGGCGGCCACAGCCTCCTGATGATGGGCGAGCCGGGCTCGGGCAAGTCGATGCTGGGC
CAGCGCTTCGCCGGCCTGCTGCCGCCGATGCGCATCGACGAGGCGCTCGAGAGCGCGGCCATCGCGAGCCTGGGCGGGCG
CTTCTCGACCGAGCGCTGGATGCACCGGCCGACCGCGTCGCCGCACCACACCTCGAGCGCGGTGGCGCTGGTCGGTGGCG
GTTCGCCGCCGCGGCCCGGCGAGATCTCGATGGCGCACCACGGCGTGCTGTTCCTCGACGAGTTCCCCGAGTTCTCGCGC
GCCGCGCTCGAAGCGCTGCGCGAGCCGCTCGAGACCGGCACCATCACCATCGCGCGGGCCGCGCGGCGGGCCGAGTTCCC
CGCGCGCTTTCAACTCGTGGCTGCGATGAATCCGTGCCCCTGCGGCTTTTTGGGCGCCCCCACGAAAACCTGCCGCTGCA
CGCCCGACCAGGTGGCGCGCTACCAGCGCAAGCTCAGCGGCCCGCTCCTGGATCGCATCGACCTGCACATCGAAGTGCCC
GCGATCTCGGCGCCGCAGCTGCTCGACGCGCCCGCGGGCGAGACCACCGCCGCCATCCGCGCGCGCGTGGTCGCCGCACG
CGAACGCGCGATCGAACGCCAGGGCCGGCCCAACCAGGCGCTGCAGGGCGCCGACATCGACCGCCATGCGGCGCTGGGCG
ACGAGGCGCGCCGCTTCATGCACACGGCCGCCGCCCGGCTCGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTCAAGGTG
GCGCGCACCATCGCCGACCTCGCGGGGGCACCGGTCATCGAGACGGCGCATGTGGCGGAGGCGGTGCAGTACCGGCGGGC
GCTGCAGAAGAGCCTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-404)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.888

99.023

0.504
  comM Haemophilus influenzae Rd KW20

49.419

100

0.498
  comM Glaesserella parasuis strain SC1401

48.743

100

0.492
  comM Vibrio campbellii strain DS40M4

49.112

99.023

0.486
  comM Legionella pneumophila str. Paris

47.461

100

0.475
  comM Legionella pneumophila strain ERS1305867

47.461

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

99.609

0.432

Multiple sequence alignment