Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEN8Q_RS23990 Genome accession   NZ_CP168522
Coordinates   5307293..5308786 (-) Length   497 a.a.
NCBI ID   WP_413703819.1    Uniprot ID   -
Organism   Pseudomonas sp. Pseusp16 strain CT11-16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5302293..5313786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN8Q_RS23980 (ACEN8Q_23975) - 5304441..5305808 (-) 1368 WP_413703818.1 SrfA family protein -
  ACEN8Q_RS23985 (ACEN8Q_23980) - 5306075..5307286 (+) 1212 WP_413427660.1 aldose 1-epimerase family protein -
  ACEN8Q_RS23990 (ACEN8Q_23985) comM 5307293..5308786 (-) 1494 WP_413703819.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEN8Q_RS23995 (ACEN8Q_23990) - 5309165..5309443 (+) 279 WP_413427677.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACEN8Q_RS24000 (ACEN8Q_23995) - 5309452..5309757 (+) 306 WP_102669368.1 HigA family addiction module antitoxin -
  ACEN8Q_RS24005 (ACEN8Q_24000) - 5309814..5310335 (-) 522 WP_413703820.1 Bro-N domain-containing protein -
  ACEN8Q_RS24010 (ACEN8Q_24005) - 5310754..5311014 (-) 261 WP_102669366.1 accessory factor UbiK family protein -
  ACEN8Q_RS24015 (ACEN8Q_24010) glnK 5311434..5311772 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACEN8Q_RS24020 (ACEN8Q_24015) - 5311808..5313145 (+) 1338 WP_085716232.1 ammonium transporter -
  ACEN8Q_RS24025 (ACEN8Q_24020) - 5313360..5313785 (+) 426 WP_008015517.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53258.38 Da        Isoelectric Point: 8.0482

>NTDB_id=1044462 ACEN8Q_RS23990 WP_413703819.1 5307293..5308786(-) (comM) [Pseudomonas sp. Pseusp16 strain CT11-16]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPETAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDAECLGELALSGAVRAVRGVLPAALAARKAGRWLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPIEPYVSNGLLYASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVVSCSPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
SDDTATAAELVADARERQHKRQGCANAFLDLPGLRRHCKLSTADENWLESACERLTLSLRAAHRLLKVARTLADLEQADG
IRREHLAEALQYRPTTL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1044462 ACEN8Q_RS23990 WP_413703819.1 5307293..5308786(-) (comM) [Pseudomonas sp. Pseusp16 strain CT11-16]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCGCCTGCTGTTACCGTCGAGGTCCACCTGGCCAA
TGGTTTGCCATCGCTGACCATGGTCGGGCTGCCTGAAACGGCGGTGAAGGAAAGCAAGGATCGGGTGCGCAGTGCGATCA
TCAATTCGGGGCTGCAATTTCCGGCGCGGCGGATCACGTTGAATCTGGCGCCGGCGGATTTACCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCCCTGGGAATTCTCTCAGCCAGTGTGCAGGTGCCGACGTTGACGCTCGATGATGCGGAATGCCT
TGGGGAGTTGGCGCTATCAGGTGCCGTGCGGGCGGTTCGAGGGGTTTTGCCAGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCTGGTTGATGGTGCCGCGAGCGAACGCCGAGGAAGCGTGCCTTGCCTCTGGACTGAAAGTGATTGCCGTGGACCATCTG
CTTGAGGCCGTCGCGCATTTCAATGGGCATACGCCGATTGAGCCTTATGTCTCCAATGGCCTGCTCTACGCCAGTAAACC
CTACCCCGACTTGAATGAAGTGCAGGGGCAACTCGCGGCCAAGCGTGCGCTGCTGATCGCTGCCGCTGGTGCTCACAACC
TGTTGTTCAGCGGGCCGCCGGGAACGGGGAAAACCCTGTTGGCGAGCCGCTTGCCGGGATTGCTGCCGCCGCTGGCCGAA
AACGAAGCGCTGGAAGTGGCGGCGATTCAGTCGGTCGTCAGTTGTTCGCCGTTGAGCCACTGGCCGCAGCGGCCGTTTCG
CCAGCCACATCACTCTGCCTCCGGCCCGGCACTGGTGGGTGGCGGCTCGAAACCACAACCGGGCGAAATCACCCTCGCCC
ACCACGGTGTACTGTTCCTCGATGAGCTCCCGGAATTTGATCGCAAGGTATTGGAGGTGTTGAGAGAGCCACTGGAATCC
GGCCACATCGTGATTTCCCGCGCCAAGGACCGCGTACGCTTCCCGGCGCGCTTTCAACTGGTCGCAGCGATGAATCCTTG
CCCCTGTGGATATCTCGGCGAACCGAGCGGCCGCTGCTCCTGTACGCCAGACATGGTTCAACGCTATCGCAACAAGCTGT
CGGGGCCGCTGCTGGACCGCATCGATCTGCACCTGACGGTTGCACGCGAAGCCACGGCGCTGAATCCTGCGTTAAAGCCC
AGCGACGATACAGCCACCGCCGCCGAGCTGGTTGCCGATGCAAGAGAGCGGCAACACAAACGCCAAGGTTGCGCGAATGC
CTTCCTCGACCTGCCAGGCCTACGCCGGCACTGTAAGTTATCCACAGCCGATGAAAACTGGCTGGAATCCGCCTGCGAGC
GTTTAACTCTGTCGTTGCGAGCAGCCCATCGACTGCTCAAGGTCGCACGCACGCTGGCGGACCTTGAACAAGCCGACGGG
ATCAGACGCGAACATTTGGCCGAGGCACTGCAATATCGGCCGACAACACTCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Legionella pneumophila str. Paris

50.403

99.799

0.503
  comM Legionella pneumophila strain ERS1305867

50.403

99.799

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.2

100

0.455

Multiple sequence alignment