Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEI37_RS12395 Genome accession   NZ_CP168303
Coordinates   294755..296296 (-) Length   513 a.a.
NCBI ID   WP_373379138.1    Uniprot ID   -
Organism   Cupriavidus nantongensis strain HB4B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 289755..301296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEI37_RS12375 (ACEI37_12375) - 289928..290992 (+) 1065 WP_373379134.1 porin -
  ACEI37_RS12380 (ACEI37_12380) nagA 291035..292138 (+) 1104 WP_373379135.1 N-acetylglucosamine-6-phosphate deacetylase -
  ACEI37_RS12385 (ACEI37_12385) - 292131..293162 (+) 1032 WP_373379136.1 SIS domain-containing protein -
  ACEI37_RS12390 (ACEI37_12390) zwf 293254..294741 (+) 1488 WP_373379137.1 glucose-6-phosphate dehydrogenase -
  ACEI37_RS12395 (ACEI37_12395) comM 294755..296296 (-) 1542 WP_373379138.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEI37_RS12400 (ACEI37_12400) - 296388..296666 (-) 279 WP_012351595.1 accessory factor UbiK family protein -
  ACEI37_RS12405 (ACEI37_12405) - 297046..297828 (+) 783 WP_373379139.1 TorF family putative porin -
  ACEI37_RS12410 (ACEI37_12410) - 297881..298219 (+) 339 WP_010814843.1 P-II family nitrogen regulator -
  ACEI37_RS12415 (ACEI37_12415) amt 298252..299799 (+) 1548 WP_373379140.1 ammonium transporter -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 54324.37 Da        Isoelectric Point: 8.5135

>NTDB_id=1043768 ACEI37_RS12395 WP_373379138.1 294755..296296(-) (comM) [Cupriavidus nantongensis strain HB4B5]
MSLAVLRSRALTGIAAPPVRVETHLANGLPAFTIVGLADTGVRESRERVRAAILNSGYEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPADALDAHEFAAELSLSGELRPVRGALAMAMGLARDNAARAGAGETPRAFLVAAGNGAEAALIE
DLAVHAAATLRQACDHLGPVTEARLPRAMPALLPASAERGPDMRDVRGQAQARRAMEVAAAGQHSVLLVGPPGTGKSMLA
QRLPGLLPPMSLQQALEAAAVMSLTPGGFRAEAWGVRPCRAPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RRVLEVLREPLESGRITIARANGHADFPACFQFVAAMNPCPCGYLGHPDRPCRCTPDQVRRYQSRISGPMLDRIDLQVEV
PAQDQGEMLDGPPGEASAVVRARVLAARERQLARQGKPNNELGGREIEQHCAMDPQAQALLRGAMTRLAWSARSYFRVLK
VARTIADLAGADVLNAAHVGEAIQYRRALRMAG

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=1043768 ACEI37_RS12395 WP_373379138.1 294755..296296(-) (comM) [Cupriavidus nantongensis strain HB4B5]
ATGAGCCTTGCCGTCCTACGCAGCCGGGCCCTGACCGGCATCGCCGCGCCGCCGGTGCGGGTCGAGACCCACCTGGCCAA
CGGCCTGCCGGCCTTCACCATCGTCGGCCTGGCCGACACCGGCGTGCGCGAAAGCCGCGAACGCGTGCGCGCCGCCATCC
TCAACAGCGGCTACGAGTTTCCCAACCGCCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAATCCGGCCGC
TTCGACCTGGCCATTGCGCTGGGCATCCTCGCCGCCAGCGGCCAGATCCCTGCCGACGCGCTGGACGCGCATGAATTTGC
CGCCGAGCTGTCGCTGTCCGGCGAACTGCGTCCGGTGCGCGGCGCGCTGGCCATGGCGATGGGGCTGGCGCGCGACAATG
CCGCCCGCGCCGGCGCGGGCGAGACGCCGCGCGCGTTCCTGGTCGCCGCGGGCAACGGCGCCGAAGCTGCGCTGATCGAA
GACCTGGCCGTGCATGCGGCCGCCACGCTGCGCCAGGCCTGCGACCACCTCGGTCCCGTGACCGAGGCGCGGCTGCCCCG
CGCCATGCCGGCCTTGCTGCCCGCATCCGCCGAGCGCGGCCCCGACATGCGCGACGTGCGCGGCCAGGCGCAGGCGCGCC
GCGCGATGGAAGTGGCCGCGGCCGGACAACACTCGGTATTGCTGGTGGGCCCGCCTGGCACCGGCAAGTCGATGCTGGCG
CAGCGCCTGCCCGGCCTGCTGCCGCCGATGTCGCTGCAGCAGGCGCTGGAAGCCGCCGCGGTGATGAGCCTGACGCCGGG
CGGCTTCCGCGCCGAGGCCTGGGGCGTGCGCCCGTGCCGCGCGCCGCACCACACCGCGTCAGGCCCGGCCATGGTCGGCG
GCGGCGGCAATCCGCGTCCGGGCGAGATCTCGCTCGCGCACCACGGCGTGCTGTTCCTGGACGAGTTGCCCGAATTCGAC
CGCCGCGTGCTCGAAGTCCTGCGCGAGCCGCTGGAATCAGGCCGCATCACCATCGCCCGCGCCAACGGCCACGCCGACTT
CCCCGCCTGCTTCCAGTTCGTGGCGGCAATGAACCCCTGCCCGTGCGGCTACCTCGGGCACCCCGACCGGCCGTGCCGCT
GCACGCCAGACCAGGTGCGGCGCTACCAGTCGCGGATCTCGGGGCCCATGCTCGACCGCATCGACCTGCAGGTCGAGGTG
CCCGCGCAGGACCAGGGCGAAATGCTTGACGGTCCGCCCGGCGAAGCCAGCGCTGTGGTGCGCGCGCGCGTGCTGGCCGC
GCGCGAACGGCAGCTGGCCCGTCAGGGCAAGCCCAACAATGAGCTGGGCGGGCGCGAGATCGAGCAGCACTGCGCCATGG
ACCCGCAGGCTCAGGCCTTGCTGCGCGGCGCGATGACGCGGCTGGCCTGGTCGGCGCGCTCGTACTTCCGCGTACTGAAG
GTGGCGCGCACCATTGCCGACCTGGCCGGGGCCGACGTGCTGAACGCCGCGCATGTGGGCGAGGCGATCCAGTACCGGCG
CGCGCTGCGCATGGCCGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.977

99.805

0.509
  comM Vibrio campbellii strain DS40M4

49.903

100

0.501
  comM Haemophilus influenzae Rd KW20

48.45

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.733

100

0.487
  comM Legionella pneumophila str. Paris

48.733

100

0.487
  comM Glaesserella parasuis strain SC1401

47.969

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.582

100

0.431

Multiple sequence alignment