Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABNX08_RS01450 Genome accession   NZ_CP168265
Coordinates   292223..293752 (-) Length   509 a.a.
NCBI ID   WP_349605412.1    Uniprot ID   -
Organism   Cupriavidus sp. DF5525 strain 73-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 287223..298752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX08_RS01430 (ABNX08_001430) nagA 288247..289350 (+) 1104 WP_022533387.1 N-acetylglucosamine-6-phosphate deacetylase -
  ABNX08_RS01435 (ABNX08_001435) - 289343..290374 (+) 1032 WP_022533388.1 SIS domain-containing protein -
  ABNX08_RS01440 (ABNX08_001440) zwf 290443..291930 (+) 1488 WP_022533389.1 glucose-6-phosphate dehydrogenase -
  ABNX08_RS01445 (ABNX08_001445) - 291927..292172 (+) 246 WP_022533390.1 hypothetical protein -
  ABNX08_RS01450 (ABNX08_001450) comM 292223..293752 (-) 1530 WP_349605412.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABNX08_RS01455 (ABNX08_001455) - 293815..294093 (-) 279 WP_012351595.1 accessory factor UbiK family protein -
  ABNX08_RS01460 (ABNX08_001460) - 294476..295276 (+) 801 WP_022533393.1 TorF family putative porin -
  ABNX08_RS01465 (ABNX08_001465) - 295329..295667 (+) 339 WP_010814843.1 P-II family nitrogen regulator -
  ABNX08_RS01470 (ABNX08_001470) - 295701..297263 (+) 1563 WP_349605416.1 ammonium transporter -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54153.43 Da        Isoelectric Point: 8.5107

>NTDB_id=1043548 ABNX08_RS01450 WP_349605412.1 292223..293752(-) (comM) [Cupriavidus sp. DF5525 strain 73-1]
MLVVVHRARPAPPVRVETHLANGLPAFTIVGMADTGVRESRERVRAAILNSGYEFPNRRITVNLAPADLPKESGRFVMAI
ALGILAASGQIPSEALDAHEYAAELSLSGELRPVRGALAMAMGLARDNAARAAAGEAPRAFMVAAGNGAEAALIEDLAVH
AAATLRQACDHLAPLPDARLPRAAPALLSTPASGGPDMRDVRGQMQARRAMEVAAAGQHSALLVGPPGTGKSMLAQRLPG
LLPPMSLQEALESAAVMSLTPGGFRAELWAQRPCRAPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFDRRVLE
VLREPLESSRITIARAAGHADFPACFQFIAAMNPCPCGYLGHPDRPCRCTPEQVRRYQSRISGPMLDRIDLQVEVPAQDQ
GEMLDGPPGEPSASVRVRVLAARERQLARQGKPNSELGGREIELHCMLAPQAQALLRGAMTRLAWSARSYFRVLKVARII
ADLEGADVLTVAHVGEAIQYRRALRMAAG

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1043548 ABNX08_RS01450 WP_349605412.1 292223..293752(-) (comM) [Cupriavidus sp. DF5525 strain 73-1]
TTGTTAGTAGTTGTCCATCGGGCACGCCCGGCCCCGCCGGTGCGCGTCGAGACCCACCTGGCCAATGGCCTGCCGGCGTT
CACCATCGTCGGCATGGCCGACACCGGCGTGCGTGAAAGCCGCGAGCGCGTGCGCGCCGCCATCCTCAACAGCGGCTACG
AGTTTCCCAACCGCCGCATCACTGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAATCCGGCCGCTTCGTTATGGCGATC
GCACTGGGCATCCTGGCCGCCAGCGGCCAGATCCCGTCCGAGGCGCTCGACGCCCATGAATATGCCGCCGAGCTGTCGCT
GTCCGGCGAACTGCGCCCGGTGCGCGGCGCGCTCGCCATGGCGATGGGCCTGGCACGCGACAACGCCGCGCGCGCGGCCG
CCGGCGAAGCGCCGCGCGCCTTCATGGTGGCGGCAGGCAACGGTGCCGAGGCCGCGCTGATCGAAGACCTCGCAGTACAC
GCCGCCGCCACGCTGCGCCAGGCGTGCGACCACCTCGCCCCCCTGCCCGACGCCCGCCTGCCCCGCGCCGCGCCTGCCCT
GCTTTCCACGCCCGCCAGCGGCGGCCCCGACATGCGCGACGTGCGCGGCCAGATGCAGGCGCGCCGGGCGATGGAAGTCG
CGGCGGCAGGCCAGCACTCCGCGCTGTTGGTTGGCCCGCCCGGCACCGGCAAGTCGATGCTGGCGCAACGGCTGCCGGGA
CTGCTGCCGCCGATGTCGCTGCAGGAAGCGCTGGAGTCGGCCGCGGTCATGAGCCTGACGCCAGGCGGCTTCCGCGCCGA
ACTATGGGCGCAGCGCCCCTGCCGCGCGCCGCACCACACCGCGTCCGGACCGGCGATGGTCGGCGGCGGCGGCAACCCGC
GCCCAGGCGAGATCTCGCTGGCCCACCACGGCGTGCTGTTTCTCGACGAGCTTCCTGAATTCGACCGCCGGGTGCTTGAA
GTCCTCCGCGAGCCGCTGGAATCCAGCCGCATCACCATCGCCCGCGCCGCCGGGCACGCCGACTTCCCGGCCTGCTTCCA
GTTCATCGCGGCGATGAACCCGTGCCCTTGCGGCTACCTCGGCCACCCCGACCGCCCCTGCCGCTGCACGCCGGAGCAGG
TGCGGCGCTACCAGTCGCGGATCTCCGGACCGATGCTGGACCGCATCGACCTGCAGGTGGAAGTTCCCGCGCAGGACCAG
GGCGAAATGCTGGACGGCCCGCCCGGCGAACCCAGCGCCTCGGTACGCGTTCGCGTGCTGGCTGCGCGCGAGCGACAGCT
TGCGCGCCAGGGCAAGCCCAACAGCGAGTTGGGCGGGCGGGAGATCGAGCTGCACTGCATGCTTGCGCCGCAGGCGCAGG
CGCTGCTTCGGGGGGCAATGACGCGGCTGGCGTGGTCAGCGCGGTCGTATTTCCGGGTGCTGAAGGTGGCACGGATCATT
GCGGATCTGGAGGGCGCCGACGTGCTGACCGTCGCGCATGTGGGCGAGGCGATCCAGTACCGGCGGGCGTTGCGGATGGC
GGCTGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-402)

Subunit ChlI of Mg-chelatase (ChlI)

(16-130)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.899

97.642

0.487
  comM Vibrio campbellii strain DS40M4

49.698

97.642

0.485
  comM Legionella pneumophila strain ERS1305867

47.6

98.232

0.468
  comM Legionella pneumophila str. Paris

47.6

98.232

0.468
  comM Haemophilus influenzae Rd KW20

47.106

98.428

0.464
  comM Glaesserella parasuis strain SC1401

47.012

98.625

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.315

98.428

0.416

Multiple sequence alignment