Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | P6F15_RS01870 | Genome accession | NZ_CP168247 |
| Coordinates | 378561..378866 (-) | Length | 101 a.a. |
| NCBI ID | WP_053101175.1 | Uniprot ID | A0A0K1XEZ4 |
| Organism | Thiopseudomonas alkaliphila strain 177 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 373561..383866
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P6F15_RS01845 (P6F15_01845) | pgsA | 373748..374311 (-) | 564 | WP_053105121.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| P6F15_RS01850 (P6F15_01850) | uvrC | 374334..376160 (-) | 1827 | WP_053106629.1 | excinuclease ABC subunit UvrC | - |
| P6F15_RS01855 (P6F15_01855) | - | 376162..376803 (-) | 642 | WP_373332344.1 | response regulator | - |
| P6F15_RS01860 (P6F15_01860) | rnd | 377132..378256 (+) | 1125 | WP_373332345.1 | ribonuclease D | - |
| P6F15_RS01865 (P6F15_01865) | - | 378256..378549 (+) | 294 | WP_373332346.1 | YcgL domain-containing protein | - |
| P6F15_RS01870 (P6F15_01870) | comEA | 378561..378866 (-) | 306 | WP_053101175.1 | ComEA family DNA-binding protein | Machinery gene |
| P6F15_RS01875 (P6F15_01875) | - | 378956..379636 (+) | 681 | WP_373332347.1 | thiopurine S-methyltransferase | - |
| P6F15_RS01885 (P6F15_01885) | dnaX | 379960..381906 (+) | 1947 | WP_373332348.1 | DNA polymerase III subunit gamma/tau | - |
| P6F15_RS01890 (P6F15_01890) | - | 381930..382256 (+) | 327 | WP_053101181.1 | YbaB/EbfC family nucleoid-associated protein | - |
| P6F15_RS01895 (P6F15_01895) | recR | 382314..382913 (+) | 600 | WP_053101183.1 | recombination mediator RecR | - |
| P6F15_RS01900 (P6F15_01900) | - | 382999..383247 (+) | 249 | WP_373332349.1 | zinc ribbon domain-containing protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 10831.50 Da Isoelectric Point: 5.6651
>NTDB_id=1043453 P6F15_RS01870 WP_053101175.1 378561..378866(-) (comEA) [Thiopseudomonas alkaliphila strain 177]
MKRLIQALLCSTLLGLTPALVLAEEPAPAVANTQQQTQTINLNQADAETLAKHLSGIGMAKAQAIIAYREANGPFEHIDE
LLEVKGIGNATLEKNRDKLSL
MKRLIQALLCSTLLGLTPALVLAEEPAPAVANTQQQTQTINLNQADAETLAKHLSGIGMAKAQAIIAYREANGPFEHIDE
LLEVKGIGNATLEKNRDKLSL
Nucleotide
Download Length: 306 bp
>NTDB_id=1043453 P6F15_RS01870 WP_053101175.1 378561..378866(-) (comEA) [Thiopseudomonas alkaliphila strain 177]
ATGAAACGATTAATCCAAGCTCTGCTCTGCAGCACTCTACTAGGTTTAACCCCTGCATTAGTACTTGCCGAGGAGCCAGC
TCCTGCTGTAGCTAACACTCAACAACAAACTCAAACTATTAACCTAAATCAAGCTGATGCAGAAACCTTAGCCAAACACT
TATCTGGCATTGGTATGGCCAAAGCCCAAGCCATTATTGCTTATCGAGAAGCTAACGGGCCCTTTGAGCACATTGATGAG
TTACTAGAAGTCAAAGGTATCGGTAACGCCACGCTGGAAAAAAATCGCGATAAATTATCGCTCTAA
ATGAAACGATTAATCCAAGCTCTGCTCTGCAGCACTCTACTAGGTTTAACCCCTGCATTAGTACTTGCCGAGGAGCCAGC
TCCTGCTGTAGCTAACACTCAACAACAAACTCAAACTATTAACCTAAATCAAGCTGATGCAGAAACCTTAGCCAAACACT
TATCTGGCATTGGTATGGCCAAAGCCCAAGCCATTATTGCTTATCGAGAAGCTAACGGGCCCTTTGAGCACATTGATGAG
TTACTAGAAGTCAAAGGTATCGGTAACGCCACGCTGGAAAAAAATCGCGATAAATTATCGCTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50.495 |
100 |
0.505 |
| comEA | Vibrio cholerae strain A1552 |
50.495 |
100 |
0.505 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
44.037 |
100 |
0.475 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
41.593 |
100 |
0.465 |
| comEA | Legionella pneumophila str. Paris |
43.878 |
97.03 |
0.426 |
| comEA | Legionella pneumophila strain ERS1305867 |
43.878 |
97.03 |
0.426 |