Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEN3H_RS17295 Genome accession   NZ_CP168231
Coordinates   3701996..3703483 (+) Length   495 a.a.
NCBI ID   WP_373358172.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3696996..3708483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS17270 (ACEN3H_17270) ribD 3697911..3698996 (-) 1086 WP_373358170.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACEN3H_RS17275 (ACEN3H_17275) nrdR 3699012..3699470 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  ACEN3H_RS17280 (ACEN3H_17280) - 3699634..3701028 (-) 1395 WP_016144094.1 ammonium transporter -
  ACEN3H_RS17285 (ACEN3H_17285) glnK 3701086..3701424 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ACEN3H_RS17290 (ACEN3H_17290) - 3701703..3701930 (+) 228 WP_274578913.1 accessory factor UbiK family protein -
  ACEN3H_RS17295 (ACEN3H_17295) comM 3701996..3703483 (+) 1488 WP_373358172.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEN3H_RS17300 (ACEN3H_17300) - 3703480..3704931 (-) 1452 WP_373358173.1 PLP-dependent aminotransferase family protein -
  ACEN3H_RS17305 (ACEN3H_17305) - 3705043..3705819 (+) 777 WP_373358174.1 aldolase -
  ACEN3H_RS17310 (ACEN3H_17310) - 3705835..3706713 (+) 879 WP_373358175.1 dihydrodipicolinate synthase family protein -
  ACEN3H_RS17315 (ACEN3H_17315) - 3706757..3707569 (-) 813 WP_031947143.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54429.54 Da        Isoelectric Point: 7.5369

>NTDB_id=1043338 ACEN3H_RS17295 WP_373358172.1 3701996..3703483(+) (comM) [Acinetobacter lactucae strain 2024CK-01095]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPDLECYPVNHL
KEVCEHFLGTKSLSLIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPVE
GSTVVRQRVISAYEQQMQRQNCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1043338 ACEN3H_RS17295 WP_373358172.1 3701996..3703483(+) (comM) [Acinetobacter lactucae strain 2024CK-01095]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTAAGTCA
AGGCTTGCCTTCTCTTACCATTGTCGGGCTAGCAGAAGCAGCGGTAAGAGAAAGTAAAGATCGGGTTCGCTCGGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAACCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT
CTAGATTTACCGATTGCCGTAGGCATTTTAATTGCGTCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCGCTCGATGGTCATGTAAGGCCAGTGTCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAAGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCACTTACCTGACCTTGAATGTTATCCGGTGAACCACTTA
AAAGAAGTGTGTGAACATTTTCTGGGCACAAAATCGCTATCTTTGATTGAACCTGCAACGACTTCAAACCAAATGCCCTA
TAAATTTGATCTGGCAGATGTGAAAGGTCAGCTACGCCCACGTCGCGCACTAGAAATAGCTGCCGCAGGAGGTCATTCTC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAAGAAACGCTTGAAGTTGCGAGTATTTATTCCATTTCAAATACACCGCATACCTTTGGCCAGCGCCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGCTCACATCCTAAACCAGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTACCCTGCAAACTTTCAGCTCATTGCTGCGATGAACCCCTGCCCATG
TGGTTATGCATTTAATCAAGACAGCCGTTGTCAGTGTTCACCTGAGAGCATTAAGCGCTATCAAAACCGAATATCGGGCC
CGCTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACGCCTGTTGAA
GGCTCTACGGTTGTAAGACAGCGCGTGATTTCTGCTTATGAACAACAAATGCAAAGACAAAATTGTTTAAATCAAGCTCT
TTCGCCGAAGCAACTAGAACAATATGCTGTCCTTGATAGTACTTCACAGCGAATGATTGAAATGGCACAGCAACGTTTAA
ATCTATCGGCTCGTGCTTATCACCGTGTTTTACGAGTAGCGCGGACCATTGCCGATTTGGCTCAAAGCGAGATGATCCAA
AGTCCGCACCTTACAGAAGCGCTCTCCTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.605

100

0.507
  comM Glaesserella parasuis strain SC1401

49.699

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.469

Multiple sequence alignment