Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACEN3N_RS20085 Genome accession   NZ_CP168228
Coordinates   4260767..4262254 (+) Length   495 a.a.
NCBI ID   WP_262540541.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4255767..4267254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS20060 (ACEN3N_20060) ribD 4256597..4257709 (-) 1113 WP_005034444.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACEN3N_RS20065 (ACEN3N_20065) nrdR 4257742..4258206 (-) 465 WP_004825545.1 transcriptional regulator NrdR -
  ACEN3N_RS20070 (ACEN3N_20070) amt 4258367..4259770 (-) 1404 WP_151750937.1 ammonium transporter -
  ACEN3N_RS20075 (ACEN3N_20075) glnK 4259838..4260176 (-) 339 WP_004725283.1 P-II family nitrogen regulator -
  ACEN3N_RS20080 (ACEN3N_20080) - 4260468..4260695 (+) 228 WP_004825547.1 accessory factor UbiK family protein -
  ACEN3N_RS20085 (ACEN3N_20085) comM 4260767..4262254 (+) 1488 WP_262540541.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACEN3N_RS20090 (ACEN3N_20090) - 4262351..4263067 (+) 717 WP_373350580.1 hypothetical protein -
  ACEN3N_RS20095 (ACEN3N_20095) - 4263269..4264450 (-) 1182 WP_151806366.1 carbohydrate porin -
  ACEN3N_RS20100 (ACEN3N_20100) - 4264727..4265779 (-) 1053 WP_004825556.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54481.56 Da        Isoelectric Point: 7.8314

>NTDB_id=1043290 ACEN3N_RS20085 WP_262540541.1 4260767..4262254(+) (comM) [Acinetobacter bereziniae strain 2024CK-01176]
MSLAKIYTRGLLGLHAPLIEVEVHVSAGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPENVTDDFEFIGELALDGHLRPVTGTLTIAMACQLAKHQLMLPQENADEAAQLPEFKVFAAHHL
KQVCDHFLNTQKIEVTSTQKSTLDKQYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPALNP
QENLEVASIYSIANTQHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IIISRASRQITFPANFQLIAAMNPCPCGYSFNQDSRCQCSAESIKRYQSRISGPLLDRIDLHIDVPPLKAQELQDTTPVE
DSATVRERVLQAFHFQIQRQGGLNHALSPKQLEKYVVLDETSQKMIEMAQQRLNLSARAYHRILRVSRTIADLAQSEQIQ
STHLTEALSYRGTQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1043290 ACEN3N_RS20085 WP_262540541.1 4260767..4262254(+) (comM) [Acinetobacter bereziniae strain 2024CK-01176]
ATGTCTTTAGCCAAAATTTATACACGAGGCTTACTTGGATTGCATGCACCTTTAATTGAAGTAGAGGTCCATGTTAGTGC
AGGACTACCTTCTTTAACGATTGTTGGTTTGGCAGAAGCAGCCGTTCGTGAAAGTAAGGATCGTGTCCGCTCTGCAATCA
TCAATAGTGGTTTTCAGTTTCCAACCAAACGCTTGACCATCAATCTGGCACCTGCAGACCTTCCTAAGGATGGCTCTCGC
TTAGATCTTCCGATTGCATTAGGAATTCTGATTGCGACAGGTCAACTCCCTGAGAATGTGACAGACGATTTCGAGTTTAT
TGGTGAGTTAGCACTGGATGGTCATTTAAGACCTGTTACTGGTACATTAACGATTGCAATGGCTTGTCAATTGGCAAAGC
ACCAATTGATGCTTCCTCAAGAAAATGCTGATGAAGCCGCACAATTACCCGAATTCAAGGTATTTGCTGCACATCATTTA
AAACAAGTCTGTGATCATTTTTTAAATACACAAAAAATTGAAGTAACCTCCACACAAAAATCTACTTTGGACAAACAATA
TAAATTTGATTTGGCTGATGTAAAAGGCCAGTTACGCCCTCGAAGAGCTCTAGAAATTGCCGCTGCAGGTGGACACTCGC
TTTTATTTAAAGGACCACCAGGAACAGGTAAAACACTTTTAGCTTCACGTTTACCTAGTATTTTGCCTGCCTTGAATCCA
CAAGAAAATCTCGAAGTCGCCAGTATTTATTCGATTGCCAACACTCAACATCACTTTGGGCAGCGACCTTTTCGAGCACC
TCATCATACGGCTTCTGCAATTGCCTTGGTGGGAGGTGGATCGAACCCGAAACCCGGAGAAATTACACTTGCGCATTTAG
GGGTACTTTTCTTGGATGAATTACCCGAGTTTGATAAGAAAGTCTTAGAAGTTTTAAGGCAACCCCTTGAGTCTAAAGAA
ATCATCATTTCAAGAGCATCAAGACAAATTACCTTTCCAGCAAATTTTCAACTCATCGCAGCAATGAATCCATGTCCTTG
TGGTTATTCTTTTAATCAAGATAGCCGTTGCCAGTGCTCAGCTGAATCAATCAAACGTTATCAAAGTCGAATCTCAGGTC
CTTTATTGGATCGTATTGATCTACATATCGATGTACCACCATTAAAAGCTCAAGAATTACAAGATACAACTCCTGTTGAA
GATTCAGCAACAGTGCGAGAACGCGTACTTCAAGCTTTTCATTTTCAAATTCAACGCCAAGGCGGATTAAATCACGCTTT
ATCGCCAAAACAGTTGGAAAAGTATGTAGTTTTGGATGAAACATCCCAAAAGATGATTGAGATGGCACAACAACGCTTAA
ACTTATCTGCGCGGGCATATCACCGTATTTTACGTGTTTCTAGAACCATTGCAGATTTAGCACAAAGTGAACAAATTCAA
AGTACGCATTTGACAGAAGCTTTATCTTATCGGGGAACGCAGTCTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.2

100

0.517
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Vibrio cholerae strain A1552

50.505

100

0.505
  comM Vibrio campbellii strain DS40M4

50.505

100

0.505
  comM Legionella pneumophila str. Paris

49.597

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.469

Multiple sequence alignment