Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QOR55_RS01945 Genome accession   NZ_OX460911
Coordinates   338320..338985 (+) Length   221 a.a.
NCBI ID   WP_017647122.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-322     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333320..343985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR55_RS01920 - 333338..334006 (+) 669 WP_000394892.1 fructose-6-phosphate aldolase -
  QOR55_RS01925 - 334074..335162 (+) 1089 WP_017647121.1 glycerol dehydrogenase -
  QOR55_RS01930 cysK 335314..336240 (-) 927 WP_000036946.1 cysteine synthase A -
  QOR55_RS01935 - 336331..336975 (-) 645 WP_001108150.1 YigZ family protein -
  QOR55_RS01940 comFA/cflA 337031..338320 (+) 1290 WP_000432963.1 DEAD/DEAH box helicase Machinery gene
  QOR55_RS01945 comFC/cflB 338320..338985 (+) 666 WP_017647122.1 ComF family protein Machinery gene
  QOR55_RS01950 raiA 339062..339616 (+) 555 WP_000599096.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25573.78 Da        Isoelectric Point: 9.4466

>NTDB_id=1043005 QOR55_RS01945 WP_017647122.1 338320..338985(+) (comFC/cflB) [Streptococcus agalactiae isolate MRI Z2-322]
MTCLLCHEIDLSQLTFVEFILLKPKQNVICQTCKGSFEALGREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKRYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELRDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1043005 QOR55_RS01945 WP_017647122.1 338320..338985(+) (comFC/cflB) [Streptococcus agalactiae isolate MRI Z2-322]
ATGACTTGTTTGTTATGTCATGAAATAGATTTGTCGCAATTAACTTTTGTGGAATTTATACTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTGGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATCC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAGGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTATAAAAATATTCTTTCTAAAAAAGATGGTGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAAGGGATAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412

Multiple sequence alignment