Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | ABQW55_RS05005 | Genome accession | NZ_CP168195 |
| Coordinates | 1188338..1189396 (+) | Length | 352 a.a. |
| NCBI ID | WP_005911892.1 | Uniprot ID | A0AAX0HYN4 |
| Organism | Xanthomonas citri pv. malvacearum strain WHRI 10262 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1179383..1212113 | 1188338..1189396 | within | 0 |
Gene organization within MGE regions
Location: 1179383..1212113
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABQW55_RS04975 (ABQW55_004975) | recG | 1179383..1181536 (+) | 2154 | WP_003486161.1 | ATP-dependent DNA helicase RecG | - |
| ABQW55_RS04980 (ABQW55_004980) | - | 1181666..1182604 (+) | 939 | WP_016848816.1 | nucleoside hydrolase | - |
| ABQW55_RS04985 (ABQW55_004985) | - | 1182676..1182918 (+) | 243 | WP_005911911.1 | type B 50S ribosomal protein L31 | - |
| ABQW55_RS04990 (ABQW55_004990) | - | 1183148..1184437 (+) | 1290 | WP_003486167.1 | citrate synthase | - |
| ABQW55_RS04995 (ABQW55_004995) | - | 1184698..1185348 (-) | 651 | WP_005911897.1 | hypothetical protein | - |
| ABQW55_RS05000 (ABQW55_005000) | - | 1185699..1188221 (-) | 2523 | WP_078566290.1 | penicillin-binding protein 1A | - |
| ABQW55_RS05005 (ABQW55_005005) | comM | 1188338..1189396 (+) | 1059 | WP_005911892.1 | pilus assembly protein PilM | Machinery gene |
| ABQW55_RS05010 (ABQW55_005010) | - | 1189396..1190178 (+) | 783 | WP_005911890.1 | PilN domain-containing protein | - |
| ABQW55_RS05015 (ABQW55_005015) | - | 1190175..1190840 (+) | 666 | WP_003486177.1 | type 4a pilus biogenesis protein PilO | - |
| ABQW55_RS05020 (ABQW55_005020) | - | 1190837..1191370 (+) | 534 | WP_003486179.1 | pilus assembly protein PilP | - |
| ABQW55_RS05025 (ABQW55_005025) | - | 1191390..1193291 (+) | 1902 | WP_033836793.1 | type IV pilus secretin PilQ | - |
| ABQW55_RS05030 (ABQW55_005030) | - | 1193353..1194129 (+) | 777 | WP_078566289.1 | hypothetical protein | - |
| ABQW55_RS05035 (ABQW55_005035) | - | 1194283..1195302 (+) | 1020 | WP_005911878.1 | MoxR family ATPase | - |
| ABQW55_RS05040 (ABQW55_005040) | - | 1195323..1196285 (+) | 963 | WP_033836792.1 | DUF58 domain-containing protein | - |
| ABQW55_RS05045 (ABQW55_005045) | - | 1196288..1196749 (+) | 462 | WP_033836791.1 | DUF4381 family protein | - |
| ABQW55_RS05050 (ABQW55_005050) | - | 1196746..1197753 (+) | 1008 | WP_033836790.1 | VWA domain-containing protein | - |
| ABQW55_RS05055 (ABQW55_005055) | - | 1197750..1199555 (+) | 1806 | WP_033836789.1 | VWA domain-containing protein | - |
| ABQW55_RS05060 (ABQW55_005060) | - | 1199552..1201300 (+) | 1749 | WP_033485648.1 | BatD family protein | - |
| ABQW55_RS05065 (ABQW55_005065) | - | 1202184..1203464 (+) | 1281 | WP_078566287.1 | dicarboxylate/amino acid:cation symporter | - |
| ABQW55_RS05070 (ABQW55_005070) | tkt | 1203690..1205690 (+) | 2001 | WP_033836788.1 | transketolase | - |
| ABQW55_RS05075 (ABQW55_005075) | - | 1205797..1206237 (-) | 441 | WP_033481503.1 | hypothetical protein | - |
| ABQW55_RS05080 (ABQW55_005080) | - | 1206207..1206788 (-) | 582 | WP_223300980.1 | alpha/beta fold hydrolase | - |
| ABQW55_RS05085 (ABQW55_005085) | fhuE | 1207185..1209371 (+) | 2187 | WP_033836787.1 | ferric-rhodotorulic acid/ferric-coprogen receptor FhuE | - |
| ABQW55_RS05090 (ABQW55_005090) | - | 1209841..1210326 (+) | 486 | WP_005917516.1 | hypothetical protein | - |
| ABQW55_RS05095 (ABQW55_005095) | - | 1210494..1210955 (-) | 462 | Protein_1002 | M23 family metallopeptidase | - |
| ABQW55_RS05100 (ABQW55_005100) | - | 1211026..1212113 (+) | 1088 | WP_089504397.1 | IS3-like element ISXac2 family transposase | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37579.19 Da Isoelectric Point: 4.3924
>NTDB_id=1043004 ABQW55_RS05005 WP_005911892.1 1188338..1189396(+) (comM) [Xanthomonas citri pv. malvacearum strain WHRI 10262]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGSRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGSRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD
Nucleotide
Download Length: 1059 bp
>NTDB_id=1043004 ABQW55_RS05005 WP_005911892.1 1188338..1189396(+) (comM) [Xanthomonas citri pv. malvacearum strain WHRI 10262]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAGCCGTTTCCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCC
GTGGCAGGGTCGGCGGTGATCACCAAGTTGATTCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
AGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGGCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAAGTGTTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGTGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGTGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAGCCGTTTCCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCC
GTGGCAGGGTCGGCGGTGATCACCAAGTTGATTCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
AGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGGCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAAGTGTTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGTGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGTGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Acinetobacter nosocomialis M2 |
51.136 |
100 |
0.511 |
| comM | Acinetobacter baylyi ADP1 |
50.997 |
99.716 |
0.509 |
| pilM | Acinetobacter baumannii D1279779 |
50.852 |
100 |
0.509 |
| pilM | Legionella pneumophila strain ERS1305867 |
47.293 |
99.716 |
0.472 |