Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABQ054_RS21285 Genome accession   NZ_CP168190
Coordinates   4916786..4918306 (+) Length   506 a.a.
NCBI ID   WP_104550212.1    Uniprot ID   A0A9X3Z0E1
Organism   Xanthomonas hortorum pv. hederae strain WHRI 7714     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4911786..4923306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ054_RS21265 (ABQ054_021265) - 4912552..4913235 (+) 684 WP_170118442.1 RIO1 family regulatory kinase/ATPase -
  ABQ054_RS21270 (ABQ054_021270) - 4913577..4915550 (-) 1974 WP_104550214.1 beta-N-acetylglucosaminidase domain-containing protein -
  ABQ054_RS21275 (ABQ054_021275) - 4915975..4916349 (-) 375 WP_273663930.1 P-II family nitrogen regulator -
  ABQ054_RS21280 (ABQ054_021280) - 4916503..4916769 (+) 267 WP_104550213.1 accessory factor UbiK family protein -
  ABQ054_RS21285 (ABQ054_021285) comM 4916786..4918306 (+) 1521 WP_104550212.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABQ054_RS21290 (ABQ054_021290) - 4918396..4918905 (+) 510 WP_104550241.1 lipocalin family protein -
  ABQ054_RS21295 (ABQ054_021295) - 4919418..4919594 (-) 177 WP_006449000.1 hypothetical protein -
  ABQ054_RS21300 (ABQ054_021300) - 4919979..4921541 (+) 1563 WP_104550211.1 EAL domain-containing protein -
  ABQ054_RS21305 (ABQ054_021305) - 4921793..4922917 (-) 1125 WP_104550210.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53864.61 Da        Isoelectric Point: 8.3425

>NTDB_id=1042983 ABQ054_RS21285 WP_104550212.1 4916786..4918306(+) (comM) [Xanthomonas hortorum pv. hederae strain WHRI 7714]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGTQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLVRWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDSSGRCRCSSDTIGRYRSRISGPLLDRIDLHVEVPRLPPQALRNGN
VGEDSASVRTRVVAARARQLARAGVPNAQLDQAQTDHHCRLQNDDQLLLERATEHLQLSARSMHRILRVARTIADLDDSA
VIATRHLTEAIGYRKLDRAVGTVSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1042983 ABQ054_RS21285 WP_104550212.1 4916786..4918306(+) (comM) [Xanthomonas hortorum pv. hederae strain WHRI 7714]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCTGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAATCGCGCGAACGCGTGCGTGCGGCGCTGC
TGTGCGCACAATTCGAATTCCCCGCGCGGCGCATCACCATCAACCTGGCGCCGGCCGATTTACCCAAGGAGGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTGGCCGCCAGCGGGCAGATCGACCGCCAGGCCTTGGCCGAGTACGAATTTCT
CGGCGAGCTCGCCCTGACCGGCGAGTTGCGCGGTGTCGATGGCGTACTGCCCGCCGCGCTGGCAGCCGCGCAGGCCGGCC
GCCGCCTGATCGTGCCGCTGGCCAACGGTGCCGAGGCCGCCATCGCCGGCCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGTGCCACGCTCAATGGCACCCAGAAGGCGCCCGCCGCCGAACTGGCGGTGCAAGCGCTCGGCGCACGCGC
CCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCCCGCCGCGCACTGGAAATTGCCGCAGCCGGCGGTCACCATT
TATTGCTGGTCGGTAGCCCTGGCTGCGGCAAGACCTTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGAAGCCAGCGAA
GCCGAGGCGCTGGAAACCGCTGCCATTACCTCCATCAGCGGTCGCGGACTGGATCTTGTGCGCTGGCGGCAACGCCCCTA
TCGGGCTCCGCACCACACCGCCAGCGCGGTCGCCTTGGTTGGCGGCGGCACACATCCACGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGTTGTTTCTGGACGAGTTGCCCGAATGGCAACGCCAAACGCTGGAAGTGCTGCGCGAGCCGCTGGAA
TCGGGCCTGGTCACCATCTCGCGCGCCGCGCGCAGTGTGGATTTCCCGGCAAGATTCCAACTGGTCGCTGCGATGAATCC
CTGTCCGTGCGGGTGGGCTGGCGATAGCAGCGGGCGTTGCCGTTGCAGCAGCGACACCATCGGCCGTTATCGCAGCCGGA
TCTCCGGGCCGCTGCTGGACCGGATCGATCTGCATGTCGAAGTCCCGCGCCTGCCACCGCAGGCCCTGCGCAACGGCAAT
GTCGGCGAGGACAGCGCCAGCGTGCGCACGCGCGTGGTCGCGGCGCGCGCGCGGCAACTTGCACGTGCCGGCGTGCCCAA
TGCACAACTGGACCAGGCACAAACCGATCATCACTGCCGCCTGCAAAATGACGATCAGCTGTTGCTGGAACGCGCCACCG
AACACCTGCAGCTATCCGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GTCATTGCAACGCGTCATCTGACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCGGTGGGCACGGTAAGCGCAGCCTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.719

100

0.567
  comM Haemophilus influenzae Rd KW20

55.577

100

0.561
  comM Glaesserella parasuis strain SC1401

55.05

99.802

0.549
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.495

99.012

0.52
  comM Legionella pneumophila strain ERS1305867

52.495

99.012

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.199

100

0.468

Multiple sequence alignment