Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QOR56_RS02005 Genome accession   NZ_OX460906
Coordinates   358473..359138 (+) Length   221 a.a.
NCBI ID   WP_000128298.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353473..364138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS01980 - 353491..354159 (+) 669 WP_000394891.1 fructose-6-phosphate aldolase -
  QOR56_RS01985 - 354227..355315 (+) 1089 WP_000862118.1 glycerol dehydrogenase -
  QOR56_RS01990 cysK 355467..356393 (-) 927 WP_000036943.1 cysteine synthase A -
  QOR56_RS01995 - 356484..357128 (-) 645 WP_001108149.1 YigZ family protein -
  QOR56_RS02000 comFA/cflA 357184..358473 (+) 1290 WP_000432963.1 DEAD/DEAH box helicase Machinery gene
  QOR56_RS02005 comFC/cflB 358473..359138 (+) 666 WP_000128298.1 ComF family protein Machinery gene
  QOR56_RS02010 raiA 359215..359769 (+) 555 WP_000599096.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25559.81 Da        Isoelectric Point: 9.4414

>NTDB_id=1042903 QOR56_RS02005 WP_000128298.1 358473..359138(+) (comFC/cflB) [Streptococcus agalactiae isolate MRI Z2-265]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKKYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELRDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1042903 QOR56_RS02005 WP_000128298.1 358473..359138(+) (comFC/cflB) [Streptococcus agalactiae isolate MRI Z2-265]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
TGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAAGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTACAAAAATATTCTTTCTAAAAAAGATGGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAAGGGATAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.986

100

0.43
  comFC/cflB Streptococcus pneumoniae Rx1

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae D39

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae R6

42.534

100

0.425
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416

Multiple sequence alignment