Detailed information NTG1042902

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABQY58_RS08420
• Genome accession: NZ_CP168173
• Coordinates: 1969844..1970974 (+)
• Length: 376 a.a.
• NCBI ID: WP_006448884.1
• Uniprot ID: A0A0G8P0N2
• Organism: Xanthomonas hortorum pv. hederae strain WHRI 7734A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1971652..1972632	1969844..1970974	flank	678

Gene organization within MGE regions

Location: 1969844..1972632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABQY58_RS08420 (ABQY58_008420)	pilU	1969844..1970974 (+)	1131	WP_006448884.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABQY58_RS08425 (ABQY58_008425)	-	1971277..1971594 (+)	318	Protein_1658	YitT family protein	-
ABQY58_RS08430 (ABQY58_008430)	-	1971652..1972632 (+)	981	WP_374151397.1	IS5 family transposase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41991.26 Da
• Isoelectric Point: 6.7684

>NTDB_id=1042902 ABQY58_RS08420 WP_006448884.1 1969844..1970974(+) (pilU) [Xanthomonas hortorum pv. hederae strain WHRI 7734A]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVNGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAVAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRSRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLAQGMDGVEIAEVR

Nucleotide

• Length: 1131 bp

>NTDB_id=1042902 ABQY58_RS08420 WP_006448884.1 1969844..1970974(+) (pilU) [Xanthomonas hortorum pv. hederae strain WHRI 7734A]
ATGAGCACTATCGACTTCACCTCGTTCCTCAAGCTGATGGCGCACCAGAAGGCGTCGGATCTGTTCATCACCTCGGGCAT
GCCGCCGGCGATCAAGGTCAACGGCAAGATCAGCCCGATCACCCAGACACCGCTGACGGCGCAACAAAGTCGCGATCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAAGAATTCGAAAAGACGCATGAGTGCAACTTCGCCATCGGCGTGTCAGGG
GTCGGGCGTTTTCGTGTGAGCTGTTTCTATCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATTGAAACGCGGATTCC
CACGGTGGAAGAGTTGAGCCTGCCGCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATTTTCGTCGGCG
CCACCGGTACCGGTAAGTCGACCTCGCTGGCGGCGATGATCGGTTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGATCCGATCGAATTCGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAAGTCGGCATCGATACCGACAG
CTGGGAAAACGCGCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAAGGGA
TGGACCACGCGGTGGCATTCGCTGAAACCGGCCATCTGGTGCTGTGCACCCTGCATGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCGGAAGATCGCCGCAATCAGCTGCTGATGGATCTGTCGCTCAATCTCAAGGGCGTGGT
CGCGCAGCAATTGATTCCGACTCCGGACGGGCGCAGCCGCCGCGTGGCGATGGAGATCATGTTGGGCACCCCGCTGGTGC
AGGATTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GATCAGAGCCTGTTCGAGCTGTATCAGGCCGGCGAAATCAGCTACGAAGACGCGCTGCGCTATGCCGATTCGCAGAACGA
AGTGCGTCTGCGCATCAAACTCTCGCAGGGCGGCGACGCCAAGACGCTGGCGCAGGGGATGGATGGTGTGGAGATTGCCG
AGGTTCGGTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-272)

3D structure

• AlphaFold DB: A0A0G8P0N2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.667	98.138	0.654
pilU	Acinetobacter baylyi ADP1	64.426	94.947	0.612
pilU	Vibrio cholerae strain A1552	53.371	94.681	0.505
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.017	94.947	0.399
pilT	Acinetobacter baumannii strain A118	40.116	91.489	0.367
pilT	Acinetobacter nosocomialis M2	40.116	91.489	0.367
pilT	Acinetobacter baumannii D1279779	40.116	91.489	0.367
pilT	Pseudomonas aeruginosa PAK	40.896	89.096	0.364