Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB9L16_RS25255 Genome accession   NZ_CP168138
Coordinates   5553998..5555491 (+) Length   497 a.a.
NCBI ID   WP_071172128.1    Uniprot ID   -
Organism   Pseudomonas sp. LW8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5548998..5560491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L16_RS25225 (AB9L16_25225) - 5549407..5549832 (-) 426 WP_024014775.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AB9L16_RS25230 (AB9L16_25230) - 5550048..5551385 (-) 1338 WP_041476939.1 ammonium transporter -
  AB9L16_RS25235 (AB9L16_25235) glnK 5551423..5551761 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  AB9L16_RS25240 (AB9L16_25240) - 5552156..5552416 (+) 261 WP_095181253.1 accessory factor UbiK family protein -
  AB9L16_RS25245 (AB9L16_25245) - 5552628..5552816 (-) 189 WP_375122861.1 transcriptional regulator -
  AB9L16_RS25250 (AB9L16_25250) - 5553150..5553614 (+) 465 WP_082530345.1 hypothetical protein -
  AB9L16_RS25255 (AB9L16_25255) comM 5553998..5555491 (+) 1494 WP_071172128.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB9L16_RS25260 (AB9L16_25260) - 5555488..5556702 (-) 1215 WP_252877101.1 aldose 1-epimerase family protein -
  AB9L16_RS25265 (AB9L16_25265) - 5556898..5558874 (-) 1977 WP_016772578.1 methyl-accepting chemotaxis protein -
  AB9L16_RS25270 (AB9L16_25270) - 5559063..5559983 (-) 921 WP_024014781.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52864.09 Da        Isoelectric Point: 8.1592

>NTDB_id=1042517 AB9L16_RS25255 WP_071172128.1 5553998..5555491(+) (comM) [Pseudomonas sp. LW8]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDEVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAAKPYPDLNEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAAKP
GENSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCKLSTADEKWLEAACERLILSLRSAHRLLKVARTLADLEQADA
ITREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1042517 AB9L16_RS25255 WP_071172128.1 5553998..5555491(+) (comM) [Pseudomonas sp. LW8]
ATGTCCCTCTCCATTGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCCCCCGCTGTTACCGTCGAAGTCCATCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGATCGCGTACGCAGCGCGATCA
TCAATTCCGGGCTGCAATTTCCGGCGCGGCGGATCACCCTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCCTTGGGGATTTTGTCGGCCAGTGTGCAGGTGCCCTGCCTGACCCTGGACGAGGTGGAATGTCT
GGGCGAGTTGGCGCTGTCGGGTGCCGTGCGGCCGGTGCGTGGTGTGCTGCCGGCGGCACTGGCGGCGCGCAAGGCCGGGC
GGGCGCTGGTGGTGCCTCGAGCGAATGCAGAAGAGGCGTGCCTGGCATCCGGGCTCAAGGTGTTTGCGGTCGATCATTTG
CTGGAAGCGGTGGCGCATTTCAATGGGCACACGCCGGTCGAGCCTTACGTTTCCGATGGTTTGATGCACGCTGCCAAGCC
CTATCCCGACCTCAACGAAGTGCAGGGTCAAACAGCCGCAAAACGCGCATTGCTGATTGCCGCAGCGGGGGCGCACAACT
TGTTGTTCAGCGGGCCTCCGGGAACCGGCAAGACGCTGCTGGCCAGTCGTCTGCCAGGATTACTGCCACCGCTTTCCGAA
TGTGAGGCGCTGGAAGTGGCAGCGATTCAATCGGTCGCCAGCGGGGTGCCTCTGACTCACTGGCCGCAACGCCCCTTCCG
CCAACCACACCATTCGGCTTCAGGGCCGGCATTGGTCGGTGGCAGCTCGAAACCGCAACCCGGCGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAGTTGCCGGAGTTTGATCGCAAGGTGTTGGAAGTTTTACGCGAGCCTTTGGAGTCG
GGACATATCGTCATCGCGCGGGCCAAGGATCGCGTACGTTTCCCCGCGCGATTTCAATTGGTTGCCGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGAACCGAGCGGCAAATGCTCGTGCACACCGGACATGGTCCAGCGCTATCGCAACAAGCTGT
CAGGGCCGCTGCTGGACCGGATCGATCTGCACCTGACCGTGGCGCGGGAGGCAACCGCGTTGAATCCGGCAGCCAAGCCC
GGCGAAAACAGCGCCAGCGCTGCGGCTCTGGTGGCCGAGGCTCGCGAACGACAGCAGAAGCGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGCTCAAGCGTCACTGCAAGTTATCCACAGCTGACGAGAAATGGCTGGAGGCGGCATGCGAGC
GACTGATCCTGTCGCTGCGCTCGGCGCATCGCCTGCTCAAGGTCGCGCGCACACTGGCGGATCTTGAGCAGGCCGATGCG
ATTACCCGCGAGCATCTGGCCGAGGCACTGCAATACCGGCCGGCGACACCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.59

100

0.531
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.491

100

0.457

Multiple sequence alignment